Evidence map›Paper›PMID 40476539›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2025

Resolving Artifacts in Voltage-Clamp Experiments with Computational Modeling: An Application to Fast Sodium Current Recordings.

Chon Lok Lei, Alexander P Clark, Michael Clerx, Siyu Wei, Meye Bloothooft, Teun P de Boer, David J Christini, Trine Krogh-Madsen, Gary R Mirams

Abstract readValidation Study
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Parameter inference for stochastic reaction models of ion channel gating from whole-cell voltage-clamp data.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Chon Lok LeiInstitute of Translational Medicine, Faculty of Health Sciences, University of Macau, Macau, 999078, China.ORCID https://orcid.org/0000-0003-0904-554X
Alexander P ClarkDepartment of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.ORCID https://orcid.org/0000-0002-5200-6573
Michael ClerxCentre for Mathematical Medicine & Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, Nottinghamshire, NG7 2RD, UK.ORCID https://orcid.org/0000-0003-4062-3061
Siyu WeiDepartment of Physiology & Pharmacology, SUNY Downstate Health Sciences University, Brooklyn, NY, 11203, USA.ORCID https://orcid.org/0000-0003-1085-6788
Meye BloothooftDepartment of Medical Physiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht, 3584 CM, Netherlands.ORCID https://orcid.org/0000-0003-0614-8885
Teun P de BoerDepartment of Medical Physiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht, 3584 CM, Netherlands.ORCID https://orcid.org/0000-0002-0561-6491
David J ChristiniDepartment of Physiology & Pharmacology, SUNY Downstate Health Sciences University, Brooklyn, NY, 11203, USA.ORCID https://orcid.org/0000-0003-0852-2922
Trine Krogh-MadsenDepartment of Physiology & Pharmacology, SUNY Downstate Health Sciences University, Brooklyn, NY, 11203, USA.ORCID https://orcid.org/0000-0003-2298-6918
Gary R MiramsCentre for Mathematical Medicine & Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, Nottinghamshire, NG7 2RD, UK.ORCID https://orcid.org/0000-0002-4569-4312

Funding

Multiscale modeling to map cardiac electrophysiology between speciesU01HL136297 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHRISTINI, DAVID J., SOBIE, ERIC A · 2017 to 2021
$3.2M
Predicting Drug Cardiotoxicity Targets Using iPSC-Derived Cardiomyocytes and Machine LearningF31HL154655 · NHLBI · CORNELL UNIVERSITY · PI CLARK, ALEXANDER P · 2020 to 2022
$99k
NHLBI NIH HHS F31 HL154655NHLBI NIH HHS F31HL154655NHLBI NIH HHS U01 HL136297NHLBI NIH HHS U01HL136297Science and Technology Development Fund of Macau SAR 0048/2022/AScience and Technology Development Fund of Macau SAR 0155/2023/RIA3University of Macau SRG2024-00014-FHSWellcome TrustWellcome Trust 212203/Z/18/ZZonMw 114022502
6 · The paper itself

Abstract

Cellular electrophysiology underpins fields from basic science in neurology, cardiology, and oncology to safety critical applications for drug safety testing, risk assessment of rare mutations, and models based on cellular electrophysiology data even guide clinical interventions. Patch-clamp voltage clamp is the gold standard for measuring ionic current dynamics that explain cellular electrophysiology, but recordings can be influenced by artifacts introduced by the measurement process. A computational approach is developed, validated through electrical model cell experiments, to explain and predict intricate artifacts in voltage-clamp experiments. Applied to various cardiac fast sodium current measurements, the model resolved artifacts in the experiments by coupling observed current with simulated membrane voltage, explaining some typically observed shifts and delays in recorded currents. It is shown that averaging data for current-voltage relationships can introduce biases comparable to effect sizes reported for disease-causing mutations. The computational pipeline provides improved assessment and interpretation of voltage-clamp experiments, correcting, and enhancing understanding of ion channel behavior.

Indexed as

Electrophysiological PhenomenaModels, BiologicalPatch-Clamp TechniquesSodiumAction PotentialsHEK293 CellsHumansIon ChannelsIon ChannelsSodiumcomputational modelexperimental errorfast sodium currentpatch clampvoltage clamp

Identifiers

PMID40476539
PMCPMC12376535

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.