Evidence map›Paper›PMID 40475769›Full record

ReviewFrontiers in immunology2025

Applying computational protein design to therapeutic antibody discovery - current state and perspectives.

Weronika Bielska, Igor Jaszczyszyn, Pawel Dudzic, Bartosz Janusz, Dawid Chomicz, Sonia Wrobel, Victor Greiff, Ryan Feehan, Jared Adolf-Bryfogle, Konrad Krawczyk

Abstract readReview
In one paragraph

Review in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Monoclonal Antibodies Targeting Bacterial Infections: A Broad Review of the Field.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Weronika Bielska *NaturalAntibody, Szczecin, Poland.
Igor Jaszczyszyn *NaturalAntibody, Szczecin, Poland.
Pawel DudzicNaturalAntibody, Szczecin, Poland.
Bartosz JanuszNaturalAntibody, Szczecin, Poland.
Dawid ChomiczNaturalAntibody, Szczecin, Poland.
Sonia WrobelNaturalAntibody, Szczecin, Poland.
Victor GreiffDepartment of Immunology, University of Oslo, Oslo, Norway.
Ryan FeehanJanssen Pharmaceuticals, Titusville, NJ, United States.
Jared Adolf-BryfogleJanssen Pharmaceuticals, Titusville, NJ, United States.
Konrad KrawczykNaturalAntibody, Szczecin, Poland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Machine learning applications in protein sciences have ushered in a new era for designing molecules in silico. Antibodies, which currently form the largest group of biologics in clinical use, stand to benefit greatly from this shift. Despite the proliferation of these protein design tools, their direct application to antibodies is often limited by the unique structural biology of these molecules. We note that multiple methods attempting antibody design focus on the discovery of an antigen-specific antibody. Here, we review the current computational methods for antibody design, focusing on binder discovery, contextualizing their role in the drug discovery process.

Indexed as

AntibodiesComputational BiologyDrug DesignDrug DiscoveryProtein EngineeringAnimalsHumansMachine LearningAntibodiesAlphaFold 2antibody discoverydrug discoverymachine learningprotein designtherapeutic antibodies

Identifiers

PMID40475769
PMCPMC12137305

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.