Evidence map›Paper›PMID 40475427›Full record

ArticlebioRxiv : the preprint server for biology2025

Adaptive Evolution of Gene Regulatory Networks in Mammalian Neocortical Neurons.

Zhuo Li, Navjot Kaur, Gabriel Santpere, Sydney K Muchnik, Suvimal Kumar Sindhu, Cai Qi, Mikihito Shibata, Olivier Clément, Thomas S Klarić, Xabier de Martin and 29 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

39 authors.

Zhuo LiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Navjot KaurDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0001-8514-203X
Gabriel SantpereDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Sydney K MuchnikDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Suvimal Kumar SindhuDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0002-7461-3104
Cai QiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Mikihito ShibataDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Olivier ClémentThe Harry Perkins Institute of Medical Research, Perth, WA 6009, Australia.
Thomas S KlarićDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Xabier de MartinNeurogenomics Group, Hospital del Mar Research Institute, PRBB, Barcelona, Catalonia, Spain.
Victor LuriaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Hyesun ChoDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Mingfeng LiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Akemi ShibataDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Andrew T N TebbenkampDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Shaojie MaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Wenqi HanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Suel-Kee KimDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.ORCID 0000-0003-0240-9304
Sirisha PochareddyDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Phan Q DuyDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Xiaojun XingDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Yunhua BaoDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Xuming XuDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Ivan Enghian Gladwyn-NgThe Harry Perkins Institute of Medical Research, Perth, WA 6009, Australia.
Hayley Daniella CullenThe Harry Perkins Institute of Medical Research, Perth, WA 6009, Australia.
Annalisa PaolinoThe University of Queensland, Queensland Brain Institute, Brisbane, QLD 4070, Australia.
Laura R FenlonThe University of Queensland, Queensland Brain Institute, Brisbane, QLD 4070, Australia.
Peter KozulinThe University of Queensland, Queensland Brain Institute, Brisbane, QLD 4070, Australia.
Rodrigo SuárezThe University of Queensland, Queensland Brain Institute, Brisbane, QLD 4070, Australia.
Ryan D RisgaardDepartment of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705, USA.
Forrest O GuldenDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Amir KargerIT-Research Computing, Harvard Medical School, Boston, MA 02215, USA.
Ikuo K SuzukiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Tatsumi HirataBrain Function Lab, National Institute of Genetics, 1111 Yata, Mishima-shi, Shizuoka-ken, 411-8540, Japan.
Kevin T GobeskeDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Linda J RichardsThe University of Queensland, Queensland Brain Institute, Brisbane, QLD 4070, Australia.ORCID 0000-0002-7590-7390
André M M SousaDepartment of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705, USA.ORCID 0000-0003-1740-5066
Julian I HengThe Harry Perkins Institute of Medical Research, Perth, WA 6009, Australia.
Nenad SestanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.

Funding

Functional Genomics of Human Brain DevelopmentP50MH106934 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2014 to 2019
$7.9M
1/2 Cell Type and Region-Specific Regulatory Networks in Human Brain Development and DisordersU01MH116488 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2018 to 2022
$6.5M
Heterogeneity of Forebrain Neural PrecursorsR01NS095654 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI HAYDAR, TARIK F, SESTAN, NENAD · 2015 to 2019
$3.4M
Developmental cell census of human and non-human primate brainU01MH124619 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2020 to 2022
$3.3M
1/3 Integrative Genomic Analysis of Human Brain Development and AutismR01MH110926 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2016 to 2019
$3.2M
1/2 Identification and Validation of Expression Quantitative Trait Loci (eQTLs) in discrete cell types across human brain developmentR01MH122678 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2023 to 2025
$2.2M
Identification of Genetic and Molecular Bases of Derived Phenotypes in Primate Brain DevelopmentR01HG010898 · NHGRI · YALE UNIVERSITY · PI SANTPERE BARO, GABRIEL, SESTAN, NENAD · 2020 to 2023
$2.2M
Association of gene expression and brain connectivity in human cerebral cortex development and adulthoodR01MH129981 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI HUANG, HAO · 2022 to 2025
$1.8M
1/2 Identification and Validation of Expression Quantitative Trait Loci (eQTLs) in discrete cell types across human brain developmentU01MH122678 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2021 to 2022
$1.4M
NHGRI NIH HHS R01 HG010898NIMH NIH HHS P50 MH106934NIMH NIH HHS R01 MH110926NIMH NIH HHS R01 MH122678NIMH NIH HHS R01 MH129981NIMH NIH HHS U01 MH116488NIMH NIH HHS U01 MH122678NIMH NIH HHS U01 MH124619NINDS NIH HHS R01 NS095654
6 · The paper itself

Abstract

Mammals have evolved a plethora of adaptations that have enabled them to thrive in diverse environments. Among the most significant is the emergence of a more complex brain, exemplified by the dramatic transformation of the dorsal cortex from a single layer of excitatory projection neurons (ExNs) in ancestors to a multilayered cerebral neocortex enriched with diverse intratelencephalic (IT) and extratelencephalic (ET) ExN subtypes. These ExNs established specialized projection systems, such as the corticospinal tract and corpus callosum, enhancing brain connectivity and functionality. However, the evolutionary mechanisms underlying these mammalian-specific adaptations remain elusive. By comparing the landscape of gene expression and cis-regulatory elements (CREs) in mouse ExN subtypes and by cross-species examination of mammalian and non-mammalian CREs, we identified mammalian-specific CREs and expression patterns. The mammalian-specific CREs include a subset bound by ZBTB18 that are associated with genes defining IT and ET subtypes and connectivity. Both ZBTB18 and these target genes have previously been implicated in intellectual disability and autism. Deletion of

Identifiers

PMID40475427
PMCPMC12139996

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