Evidence map›Paper›PMID 40473842›Full record

ArticleMolecular systems biology2025

Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression.

Nadine Tuechler, Mira Lea Burtscher, Martin Garrido-Rodriguez, Muzamil Majid Khan, Dénes Türei, Christian Tischer, Sarah Kaspar, Jennifer Jasmin Schwarz, Frank Stein, Mandy Rettel and 4 more

Abstract read
In one paragraph

Article in Molecular systems biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Cell-cell crosstalk in kidney health and disease.Nature reviews. Nephrology · 2026
    Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Nadine Tuechler *European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8125-3098
Mira Lea Burtscher *European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0003-2628-0795
Martin Garrido-RodriguezEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Muzamil Majid KhanEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8188-0251
Dénes TüreiHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine (ICB), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-7249-9379
Christian TischerEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Sarah KasparEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0009-0005-9745-6673
Jennifer Jasmin SchwarzEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-2406-0185
Frank SteinEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0001-9695-1692
Mandy RettelEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8304-3385
Rafael KramannDepartment of Medicine 2 (Nephrology, Immunology, Rheumatology, Hypertension), RWTH Aachen University, Medical Faculty, Aachen, Germany.ORCID http://orcid.org/0000-0003-4048-6351
Mikhail M SavitskiEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID http://orcid.org/0000-0003-2011-9247
Julio Saez-RodriguezMolecular Medicine Partnership Unit (MMPU), European Molecular Biology Laboratory and Heidelberg University, Heidelberg, Germany. saezlab@ebi.ac.uk.ORCID http://orcid.org/0000-0002-8552-8976
Rainer PepperkokEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany. pepperko@embl.de.ORCID http://orcid.org/0000-0002-9762-3583

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kidney fibrosis, characterized by excessive extracellular matrix deposition, is a progressive disease that, despite affecting 10% of the population, lacks specific treatments and suitable biomarkers. This study presents a comprehensive, time-resolved multi-omics analysis of kidney fibrosis using an in vitro model system based on human kidney PDGFRβ

Indexed as

KidneyKidney DiseasesDisease ProgressionE2F1 Transcription FactorExtracellular MatrixFibrosisGene Expression ProfilingHumansMultiomicsProteomicsProto-Oncogene Protein c-fli-1Receptor, Platelet-Derived Growth Factor betaTranscriptomeTransforming Growth Factor betaE2F1 Transcription FactorProto-Oncogene Protein c-fli-1Receptor, Platelet-Derived Growth Factor betaTransforming Growth Factor betaExtracellular MatrixKidney FibrosisMulti-omicsNetwork ModelingTime Points

Identifiers

PMID40473842
PMCPMC12322177

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.