Evidence map›Paper›PMID 40473746›Full record

ArticleScientific reports2025

Putative type III effector SkP48 of Bradyrhizobium sp. DOA9 encoding a SUMO protease blocks nodulation in Vigna radiata.

Pongdet Piromyou, Pongpan Songwattana, Jenjira Wongdee, Teerana Greetatorn, Pakpoom Boonchuen, Tarnee Phimphong, Hien P Nguyen, Monchai Manassila, Waraporn Tanthanuch, Bussayarat Maikhunthod and 5 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Pongdet Piromyou *Institute of Research and Development, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Pongpan Songwattana *Institute of Research and Development, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Jenjira WongdeeInstitute of Research and Development, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Teerana GreetatornInstitute of Research and Development, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Pakpoom BoonchuenSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Tarnee PhimphongSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Hien P NguyenSchool of Medicine and Pharmacy, Duy Tan University, Danang City, 550000, Vietnam.
Monchai ManassilaSoil Microbiology Research Sub-Group, Soil Science Research Group, Agricultural Production Science Research and Development Division, Department of Agriculture, Bangkok, 10900, Thailand.
Waraporn TanthanuchSynchrotron Light Research Institute (Public Orgnization), TH, University, Avenue, Muang District, Nakhon Ratchasima, 30000, Thailand.
Bussayarat MaikhunthodSynchrotron Light Research Institute (Public Orgnization), TH, University, Avenue, Muang District, Nakhon Ratchasima, 30000, Thailand.
Kamonluck TeamtisongThe Center for Scientific and Technological Equipment, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Panlada TittabutrSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Nantakorn BoonkerdSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand.
Eric GiraudPHIM Plant Health Institute, University of Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, 34398, France. eric.giraud@ird.fr.
Neung TeaumroongSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, 30000, Thailand. neung@sut.ac.th.

Funding

Grant from the French National Research Agency ("ET-Nod"; ANR-20-CE20-0012)JSPS-NRCT by National Research Council of Thailand N11A670769National Research Council of Thailand (NRCT) and Suranaree University of Technology / The Thailand Research Fund project TRG6280006National Science, Research, and Innovation Fund (NSRF) 195582NSRF via the Program Management Unit for Human Resources & Institutional Development, Research, and Innovation (PMU-B) B13F660067
6 · The paper itself

Abstract

Bradyrhizobium sp. DOA9 can nodulate a wide spectrum of legumes; however, unlike other bradyrhizobia, DOA9 carries a symbiotic plasmid harboring type III secretion system (T3SS) and several effector (T3E) genes, one of which encodes a putative type III effector SkP48. Here, we demonstrated the pivotal roles of SkP48 from Bradyrhizobium sp. DOA9 in inhibiting nodulation of various Vigna species and Crotalaria juncea and suppressing nodulation efficiency of Arachis hypogaea. By contrast, the nodulation efficiency of a SkP48 mutant did not differ significantly with the DOA9 wild-type strain on Macroptilium atropurpureum and Stylosanthes hamata. The SUMO domain of SkP48 is primarily responsible for the blocking nodulation phenotype V. radiata. An evolutionary analysis revealed that the SkP48 which contains a shikimate kinase and a SUMO protease (C48 cysteine peptidase) domain, SkP48 is distinct from other effectors previously reported in other bradyrhizobia and pathogenic bacteria. Our findings suggest that the putative T3E SkP48 is a key factor suppressing nodulation and nodule organogenesis in several legumes by activation of effector-triggered immunity through salicylic acid biosynthesis induction, which is deleterious to rhizobial infection. In addition, nodulation may be modulated by the function of defensins involved in jasmonic acid signalling in V. radiata SUT1.

Indexed as

Bacterial ProteinsBradyrhizobiumPlant Root NodulationType III Secretion SystemsVignaPhylogenySymbiosisBacterial ProteinsType III Secretion SystemsBradyrhizobium sp. DOA9SkP48SymbiosisT3SSVigna radiata

Identifiers

PMID40473746
PMCPMC12141436

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.