Evidence map›Paper›PMID 40472029›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Physics of notochord tube expansion in ascidians.

Wenjie Shi, Charlie Duclut, Yan Xu, Yuanting Ma, Jinghan Qiao, Boyan Lin, Dongyu Yang, Jacques Prost, Bo Dong

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wenjie Shi *Fang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0009-0005-3265-1195
Charlie Duclut *Laboratoire Physique des Cellules et Cancer (PCC), CNRS UMR 168, Institut Curie, Université Paris Sciences et Lettres, Sorbonne Université, Paris 75005, France.ORCID 0000-0002-8595-6815
Yan Xu *Fang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0003-1447-4912
Yuanting MaFang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0001-8023-7873
Jinghan QiaoFang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.
Boyan LinFang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.
Dongyu YangFang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.
Jacques ProstLaboratoire Physique des Cellules et Cancer (PCC), CNRS UMR 168, Institut Curie, Université Paris Sciences et Lettres, Sorbonne Université, Paris 75005, France.ORCID 0000-0002-0402-8022
Bo DongFang Zongxi Center for Marine EvoDevo, Ministry of Education Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China.ORCID 0000-0003-1616-5363

Funding

MOST | National Key Research and Development Program of China (NKPs) 2022YFC2601302Science & Technology Innovation Project of Laoshan Laboratory LSKJ202203204
6 · The paper itself

Abstract

Interaction of cells and the surrounding lumen drives the formation of tubular system that plays the transport and exchange functions within an organism. The physical and biological mechanisms of lumen expansion have been explored. However, how cells communicate and coordinate with the surrounding lumen, leading to continuous tube expansion to a defined geometry, is crucial but remains elusive. In this study, we utilized the ascidian notochord tube as a model to address the underlying mechanisms. We first quantitatively measured and calculated the geometric parameters and found that tube expansion experienced three distinct phases. During the growth processes, we identified and experimentally demonstrated that both Rho GTPase Cdc42 signaling-mediated cell cortex distribution and the stability of tight junctions (TJs) were essential for lumen opening and tube expansion. Based on these experimental data, a conservation-laws-based tube expansion theory was developed, considering critical cell communication pathways, including secretory activity through vesicles, asymmetric cortex tension driven anisotropic lumen geometry, as well as the TJs gate barrier function. Moreover, by estimating the critical tube expansion parameters from experimental observation, we successfully predicted tube growth kinetics under different conditions through the combination of computational and experimental approaches, highlighting the coupling between actomyosin-based active mechanics and hydraulic processes. Taken together, our findings identify the critical cellular regulatory factors that drive the biological tube expansion and maintain its stability.

Indexed as

NotochordUrochordataAnimalscdc42 GTP-Binding ProteinCell CommunicationModels, BiologicalSignal TransductionTight Junctionscdc42 GTP-Binding ProteinCdc42notochordphysical modeltight junctionstube expansion

Identifiers

PMID40472029
PMCPMC12167941

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.