ArticleiMeta2025
ggClusterNet 2: An R package for microbial co-occurrence networks and associated indicator correlation patterns.
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In one paragraph
Article in iMeta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25citing papers in PubMed
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What it found
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
25 citing papers in PubMed.
- metaFun: An analysis pipeline for metagenomic big data with fast and unified functional searches.Gut microbes · 2026Article
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- Adaptive graph learning of microbial phylogeny enables accurate and interpretable microbiome-based host phenotype prediction.Applied and environmental microbiology · 2026Article
- Joint-RPCA: domain-aware multi-omics integration for systems microbiology.Molecular systems biology · 2026Article
- Review
- Machine learning reveals biocontrol agents shaping disease outcome in natural Arabidopsis populations.Nature communications · 2026Article
- Microbial co-occurrence patterns and community assembly in seamount sediment cores: disentangling the effects of assembly processes on β-diversity.Applied and environmental microbiology · 2026Article
- ΔmSystems · 2026Article
- Article
- Rice roots recruit Bacillus via the secretion of heptadecanoic acid.Nature plants · 2026Article
- Heptadecanoic acid attracts a microbial defence force to rice roots.Nature plants · 2026Article
- Phosphorus availability drives rhizosphere metabolite-microbial community interactions to modulate cucumber susceptibility to Fusarium wilt.Microbiome · 2026Article
- Enhancing soil citrulline degrading function to mitigate soil-borne Fusarium wilt.Nature communications · 2026Article
- Constructing enriched stable consortia for enhanced fermentation of cigar tobacco leaves.Frontiers in microbiology · 2026Article
- EasyAmplicon 2: Expanding PacBio and Nanopore Long Amplicon Sequencing Analysis Pipeline for Microbiome.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Mechanisms by stand density regulates soil multifunctionality via soil environment and microbial network topology in aFrontiers in microbiology · 2026Article
- A minimal cross-kingdom SynCom promotes plant growth and suppresses wheat crown rot via coordinated rhizosphere microbiome remodeling.Frontiers in plant science · 2026Article
- Diversity and distribution of the microbiome in the bulbs and rhizosphere soil ofFrontiers in microbiology · 2026Article
- MNetClass: a control-free microbial network clustering framework for identifying central subcommunities across ecological niches.mSystems · 2025Article
- Integrative pan-cancer analysis of intratumoral microbial communities for biomarker discovery and diagnostic modeling.Journal of translational medicine · 2025Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
15 authors.
Tao WenJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.ORCID 0000-0003-0102-0487
Yong-Xin LiuGenome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen China.ORCID 0000-0003-1832-9835
Lanlan LiuJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Guoqing NiuJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Zhexu DingJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Xinyang TengJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Jie MaInner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Key Laboratory of Black Soil Protection and Utilization (Hohhot), Ministry of Agriculture and Rural Affairs Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control Hohhot China.
Ying LiuInner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Key Laboratory of Black Soil Protection and Utilization (Hohhot), Ministry of Agriculture and Rural Affairs Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control Hohhot China.
Shengdie YangJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Penghao XieJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Tianjiao ZhangJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Lei WangNational Agricultural Experimental Station for Agricultural Environment, Luhe Jiangsu Academy of Agricultural Sciences Nanjing China.
Zhanyuan LuInner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Key Laboratory of Black Soil Protection and Utilization (Hohhot), Ministry of Agriculture and Rural Affairs Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control Hohhot China.
Qirong ShenJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Jun YuanJiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving Fertilizers, Key Laboratory of Green Intelligent Fertilizer Innovation Nanjing Agricultural University Nanjing China.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Since its initial release in 2022,
Indexed as
microbial co‐occurrence networksmodularitymulti‐network comparisonmulti‐omics networknetwork visualizationtranskingdom networks
Identifiers
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LicenceCC BY
Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.