Evidence map›Paper›PMID 40465629›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Spatially resolved DNP-assisted NMR illuminates the conformational ensemble of α-synuclein in intact viable cells.

Jaka Kragelj, Rupam Ghosh, Yiling Xiao, Rania Dumarieh, Dominique Lagasca, Sakshi Krishna, Kendra K Frederick

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. MAS Cryoprobe Enhances Solid-State NMR Signals of α-Synuclein Fibrils.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Stability of the polarization agent AsymPolPOK in intact and lysed mammalian cells.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2025
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Jaka KrageljDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0001-6472-8429
Rupam GhoshDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-3095-621X
Yiling XiaoDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-4548-4833
Rania DumariehDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-4462-7134
Dominique LagascaDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0003-4404-4366
Sakshi KrishnaDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-4223-0379
Kendra K FrederickDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-8816.ORCID 0000-0002-1656-5167

Funding

RM1 Center on Macromolecular Dynamics by NMR Spectroscopy at the New York Structural Biology Center (CoMD/NMR)- Equipment Supplement RequestRM1GM145397 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI ARTHUR G PALMER · 2022 to 2026
$8.3M
High sensitivity NMR for structure determination of neurodegenerative disease associated protein aggregates in native contextsDP2NS111236 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI FREDERICK, KENDRA KING · 2018 to 2018
$2.4M
Molecular Biophysics Predoctoral Training ProgramT32GM008297 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI CHOOK, YUH MIN · 1989 to 2018
$2.4M
DYNAMIC NUCLEAR POLARIZATION SOLID STATE NMR SPECTROMETER FOR BIOMOLECULAR STUDIES10RR029249 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI MCDERMOTT, ANN E · 2010 to 2010
$2.3M
HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM008297HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) NS111236NCRR NIH HHS S10 RR029249NIGMS NIH HHS RM1 GM145397NIGMS NIH HHS T32 GM008297NINDS NIH HHS DP2 NS111236NSF (NSF) 1751174Welch Foundation (The Welch Foundation) 1-1923-20200401
6 · The paper itself

Abstract

The protein α-syn adopts a wide variety of conformations including an intrinsically disordered monomeric form and an α-helical-rich membrane-associated form that is thought to play an important role in cellular membrane processes. However, despite the high affinity of α-syn for membranes, evidence that the α-helical form is adopted inside cells has been indirect. DNP-assisted solid-state NMR on frozen cellular samples can report directly on the entire conformational ensemble. By controlling the distribution of the DNP agent throughout the cellular biomass, such experiments can provide quantitative information upon the entire structural ensemble or provide information about spatially resolved subpopulations. When the polarization agent is dispersed homogeneously throughout the cell, a minority of the α-syn inside HEK293 cells adopts a highly α-helical-rich conformation. When the polarization agent is peripherally localized, the α-helical-rich conformation predominates, indicating that it is preferentially adopted near the cellular periphery. This demonstrates how selectively altering the spatial distribution of the DNP agent can be a powerful tool to observe spatially distinct structural ensembles. This approach paves the way for more nuanced investigations into the conformations that proteins adopt in different areas of the cell.

Indexed as

alpha-SynucleinNuclear Magnetic Resonance, BiomolecularHEK293 CellsHumansMagnetic Resonance SpectroscopyProtein ConformationProtein Conformation, alpha-Helicalalpha-SynucleinDNP solid-state NMRin-cell NMRintrinsically disordered proteinα-synuclein

Identifiers

PMID40465629
PMCPMC12168001

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.