Evidence map›Paper›PMID 40463628›Full record

ArticleFrontiers in computational neuroscience2025

Simplified two-compartment neuron with calcium dynamics capturing brain-state specific apical-amplification, -isolation and -drive.

Elena Pastorelli, Alper Yegenoglu, Nicole Kolodziej, Willem Wybo, Francesco Simula, Sandra Diaz-Pier, Johan Frederik Storm, Pier Stanislao Paolucci

Abstract read
In one paragraph

Article in Frontiers in computational neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Elena PastorelliIstituto Nazionale di Fisica Nucleare, Sezione di Roma, Rome, Italy.
Alper YegenogluSimulation and Data Lab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Jülich Research Center, Jülich, Germany.
Nicole KolodziejIstituto Nazionale di Fisica Nucleare, Sezione di Roma, Rome, Italy.
Willem WyboPeter Grünberg Institute 15 - Neuromorphic Software Ecosystems, Jülich Research Center, Jülich, Germany.
Francesco SimulaIstituto Nazionale di Fisica Nucleare, Sezione di Roma, Rome, Italy.
Sandra Diaz-PierSimulation and Data Lab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Jülich Research Center, Jülich, Germany.
Johan Frederik StormBrain Signaling Group, Section for Physiology, Department of Molecular Medicine, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway.
Pier Stanislao PaolucciIstituto Nazionale di Fisica Nucleare, Sezione di Roma, Rome, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mounting experimental evidence suggests the hypothesis that brain-state-specific neural mechanisms, supported by the connectome shaped by evolution, could play a crucial role in integrating past and contextual knowledge with the current, incoming flow of evidence (e.g., from sensory systems). These mechanisms would operate across multiple spatial and temporal scales, necessitating dedicated support at the levels of individual neurons and synapses. A notable feature within the neocortex is the structure of large, deep pyramidal neurons, which exhibit a distinctive separation between an apical dendritic compartment and a basal dendritic/perisomatic compartment. This separation is characterized by distinct patterns of incoming connections and three brain-state-specific activation mechanisms, namely, apical-amplification, -isolation, and drive, which have been proposed to be associated - with wakefulness, deeper NREM sleep stages, and REM sleep, respectively. The cognitive roles of apical mechanisms have been supported by experiments in behaving animals. In contrast, classical models of learning in spiking networks are based on single-compartment neurons, lacking the ability to describe the integration of apical and basal/somatic information. This work provides the computational community with a two-compartment spiking neuron model that supports the proposed forms of brain-state-specific activity. A machine learning evolutionary algorithm, guided by a set of fitness functions, selected parameters defining neurons that express the desired apical dendritic mechanisms. The resulting spiking model can be further approximated by a piece-wise linear transfer function (ThetaPlanes) for use in large-scale bio-inspired artificial intelligence systems.

Indexed as

apical mechanismsbrain-statesevolutionary algorithmlearningmulti-compartment neuron modelsleepspiking networkstwo-compartment neuron model

Identifiers

PMID40463628
PMCPMC12130020

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.