Evidence map›Paper›PMID 40463080›Full record

ArticlebioRxiv : the preprint server for biology2025

Efficient evidence-based genome annotation with EviAnn.

Aleksey V Zimin, Daniela Puiu, Mihaela Pertea, James A Yorke, Steven L Salzberg

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Aleksey V ZiminDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD.ORCID 0000-0001-5091-3092
Daniela PuiuDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD.
Mihaela PerteaDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD.
James A YorkeDepartment of Mathematics, University of Maryland, College Park MD.
Steven L SalzbergDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD.ORCID 0000-0002-8859-7432

Funding

Computational Methods for Genome Assembly, Transcript Assembly, and Variant DiscoveryR01HG006677 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI SALZBERG, STEVEN L. · 2011 to 2025
$10.7M
Computational Methods for Microbial and Microbiome Sequence AnalysisR35GM130151 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Steven L. Salzberg · 2019 to 2026
$2.9M
Exploring new approaches for enhanced human gene annotationR35GM156470 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Mihaela Pertea · 2025 to 2026
$776k
NHGRI NIH HHS R01 HG006677NIGMS NIH HHS R35 GM130151NIGMS NIH HHS R35 GM156470
6 · The paper itself

Abstract

For many years, machine learning-based

Identifiers

PMID40463080
PMCPMC12132231

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.