Evidence map›Paper›PMID 40462975›Full record

ArticlebioRxiv : the preprint server for biology2025

fMRIPrep Lifespan: Extending A Robust Pipeline for Functional MRI Preprocessing to Developmental Neuroimaging.

Mathias Goncalves, Julia Moser, Thomas J Madison, Rae McCollum, Jacob T Lundquist, Begim Fayzullobekova, Lidia Hadera, Han H N Pham, Lucille A Moore, Audrey Houghton and 23 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Mathias GoncalvesDepartment of Psychology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-7252-7771
Julia MoserMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0002-6219-415X
Thomas J MadisonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0003-3030-6580
Rae McCollumMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0009-0002-3730-9995
Jacob T LundquistMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0001-9573-1954
Begim FayzullobekovaMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.
Lidia HaderaMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.
Han H N PhamMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.
Lucille A MooreMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0002-7665-2713
Audrey HoughtonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0001-9426-7969
Greg ConanMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.
Martin A StynerDepartment of Psychiatry and Computer Science, University of North Carolina at Chapel Hill.ORCID 0000-0002-8747-5118
Dimitrios AlexopoulosDepartment of Neurology, Washington University School of Medicine.ORCID 0000-0001-5659-8695
Christopher D SmyserDepartment of Neurology, Washington University School of Medicine.ORCID 0000-0002-4716-5190
Sally M StoyellMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0009-0000-0397-8504
Sanju KoiralaMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0001-8844-4586
Steven M NelsonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.
Kimberly B WeldonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0003-4349-9916
Erik LeeMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0001-9236-5100
Robert J M HermosilloMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0003-2959-8483
Luca VizioliCenter for Magnetic resonance Research, University of Minnesota.
Essa YacoubCenter for Magnetic resonance Research, University of Minnesota.ORCID 0009-0000-1007-9056
Gaurav H PatelDepartment of Psychiatry, Columbia University Irving Medical Center and New York State Psychiatric Institute.
Juan SanchezDepartment of Psychiatry, Columbia University Irving Medical Center and New York State Psychiatric Institute.
Kenneth WenglerDepartment of Psychiatry, Columbia University Irving Medical Center and New York State Psychiatric Institute.ORCID 0000-0002-8153-5183
Taylor SaloPenn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania.ORCID 0000-0001-9813-3167
Theodore D SatterthwaitePenn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania.ORCID 0000-0001-7072-9399
Jed T ElisonMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0002-6246-1000
Christopher J MarkiewiczDepartment of Psychology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-6533-164X
Russell A PoldrackDepartment of Psychology, Stanford University, Stanford, CA, USA.ORCID 0000-0001-6755-0259
Eric FeczkoMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.
Oscar EstebanDepartment of Psychology, Stanford University, Stanford, CA, USA.ORCID 0000-0001-8435-6191
Damien A FairMasonic Institute for the Developing Brain, University of Minnesota, Minneapolis, MN, USA.ORCID 0000-0001-8602-393X

Funding

Longitudinal Mapping of Network Development Underlying Executive Dysfunction in AdolescenceR01MH113550 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI Danielle Smith Bassett, Theodore Satterthwaite · 2018 to 2026
$6.9M
Personalized Functional Network Modeling to Characterize and Predict Psychopathology in YouthR01EB022573 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI Yong Fan, Theodore Satterthwaite · 2016 to 2026
$6.0M
Precision mapping of individualized executive networks in youthR37MH125829 · NIMH · UNIVERSITY OF MINNESOTA · PI Damien A Fair, Theodore Satterthwaite · 2021 to 2026
$4.7M
UNC/UMN Baby Connectome ProjectU01MH110274 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELISON, JED THOMAS, GILMORE, JOHN HORACE · 2016 to 2019
$4.5M
Infant Brain and Behavioral Signatures of Later Emerging Risk for PsychopathologyR01MH104324 · NIMH · UNIVERSITY OF MINNESOTA · PI ELISON, JED THOMAS · 2014 to 2018
$2.6M
NIPreps: integrating neuroimaging preprocessing workflows across modalities, populations, and speciesRF1MH121867 · NIMH · STANFORD UNIVERSITY · PI POLDRACK, RUSSELL A, ROKEM, ARIEL SHALOM · 2021 to 2022
$1.6M
NIBIB NIH HHS R01 EB022573NIMH NIH HHS R01 MH104324NIMH NIH HHS R01 MH113550NIMH NIH HHS R37 MH125829NIMH NIH HHS RF1 MH121867NIMH NIH HHS U01 MH110274
6 · The paper itself

Abstract

The adoption of a standardized preprocessing workflow is vital for fostering community, sharing, and reproducibility. fMRIPrep has been a critical advancement towards this end, however, it is limited in its capacity to be applied to data across the lifespan, starting from infancy. Here, we introduce fMRIPrep Lifespan, an extension of fMRIPrep that extends the standardized processing from childhood to senescence to include neonatal, infant, and toddler structural and functional MRI data preprocessing. This effort involves a NiPreps integration of 1) a workflow akin to fMRIPrep optimized for MRI data in the first years of life (previously NiBabies) and 2) upstream enhancements to the entire NiPreps suite, including multi-echo data processing, modularization of workflow components, and convergence of processing with other popular workflows (ABCD-BIDS, Human Connectome Project Pipelines). Using data from the Baby Connectome Project (participants 1-43 months of age), we demonstrate that fMRIPrep Lifespan produces high-quality outputs across a wide age range. Moving forward, the scalable, modular infrastructure of fMRIPrep Lifespan will ensure adaptability to data from birth to old age while maintaining robust and reproducible frameworks for functional MRI research across the lifespan.

Identifiers

PMID40462975
PMCPMC12132292

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.