Evidence map›Paper›PMID 40462966›Full record

ArticlebioRxiv : the preprint server for biology2025

Estimation of substitution and indel rates via

Mahmudur Rahman Hera, Paul Medvedev, David Koslicki, Antonio Blanca

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Mahmudur Rahman HeraSchool of Electrical Engineering and Computer Science, Pennsylvania State University, USA.ORCID 0000-0002-5992-9012
Paul MedvedevDepartment of Computer Science and Engineering, The Pennsylvania State University, University Park, USA.ORCID 0000-0003-3143-594X
David KoslickiSchool of Electrical Engineering and Computer Science, Pennsylvania State University, USA.ORCID 0000-0002-0640-954X
Antonio BlancaSchool of Electrical Engineering and Computer Science, Pennsylvania State University, USA.ORCID 0000-0002-4675-2596

Funding

Leveraging k-mer sketching statistics to enhance metagenomic methods and alignment algorithmsR01GM146462 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Antonio Blanca Pimentel, David Koslicki · 2022 to 2026
$2.2M
NIGMS NIH HHS R01 GM146462
6 · The paper itself

Abstract

Methods utilizing

Indexed as

alignment-freeApplied computing → Computational biologydeletionestimationindelinsertionk-mersMathematics of computing → Probabilistic inference problemsmutation ratesubstitutionTheory of computation → Theory and algorithms for application domains

Identifiers

PMID40462966
PMCPMC12132262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.