Evidence map›Paper›PMID 40461714›Full record

ArticleCommunications biology2025

The genomics of the domestication syndrome in a songbird model species.

Madza Farias-Virgens, David Peede, Terrence Deacon, Kazuo Okanoya, Stephanie A White, Emilia Huerta-Sanchez

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Madza Farias-VirgensDepartment of Biology, University of Washington, Seattle, WA, USA. madzafv@gmail.com.ORCID http://orcid.org/0000-0002-3764-1827
David PeedeDepartment of Ecology, Evolution, and Organismal and Evolutionary Biology, Brown University, Providence, RI, USA.
Terrence DeaconDepartment of Anthropology, University of California Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8672-5461
Kazuo OkanoyaGraduate School of Arts and Sciences, The University of Tokyo, Tokyo, Japan.
Stephanie A White *Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA.
Emilia Huerta-Sanchez *Department of Ecology, Evolution, and Organismal and Evolutionary Biology, Brown University, Providence, RI, USA.

Funding

Characterizing modes of natural selection via diverse ancient and modern samplesR35GM128946 · NIGMS · BROWN UNIVERSITY · PI Emilia Huerta-Sanchez · 2018 to 2026
$3.1M
Predoctoral Training Program in Biological Data Science at Brown UniversityT32GM128596 · NIGMS · BROWN UNIVERSITY · PI RAMACHANDRAN, SOHINI, SANDSTEDE, BJORN · 2018 to 2022
$1.5M
Predoctoral Training Program in Biological Data Science at Brown UniversityT32GM149433 · NIGMS · BROWN UNIVERSITY · PI Emilia Huerta-Sanchez, Sohini Ramachandran · 2024 to 2026
$976k
Brown University (Brown) Start-up fundsCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (Brazilian Federal Agency for the Support and Evaluation of Graduate Education) 99999006239National Science Foundation (NSF) 1557151National Science Foundation (NSF) 1613709NIGMS NIH HHS R35 GM128946NIGMS NIH HHS T32 GM128596NIGMS NIH HHS T32 GM149433UC | University of California, Los Angeles (UCLA) Brain Research Institute William Scheibel Term Chair in NeuroscienceUC | University of California, Los Angeles (UCLA) Eureka and Hyde Fellowships - Department of Integrative Biology and PhysiologyUC | University of California, Los Angeles (UCLA) Summer Grant - Interdepartmental Program in Molecular, Cellular and Integrative PhysiologyUC | University of California, Los Angeles (UCLA) Will Rogers Scholarship - Center for Accessible EducationU.S. Department of Health & Human Services | National Institutes of Health (NIH) 1R35GM128946U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM128596
6 · The paper itself

Abstract

Many domesticated animals share a syndromic phenotype marked by a suite of traits that include more variable patterns of coloration, reduced stress, aggression, and altered risk-taking and exploratory behaviors relative to their wild counterparts. Roughly 150 years after Darwin's pioneering insight into this phenomenon, reasonable progress has been made in understanding the evolutionary and biological basis of the so-called domesticated phenotype in mammals. However, the extent to which these processes are paralleled in non-mammalian domesticates is scant. Here, we address this knowledge gap by investigating the genetic basis of the domesticated phenotype in the Bengalese finch, a songbird frequently found in pet shops and a popular animal model in the study of learned vocal behaviors. Using whole-genome sequencing and population genomic approaches, we identify strain-specific selection signals in the Bengalee finch and its wild munia ancestor. Our findings suggest that, like in mammals, the evolution of the domestication syndrome in avian species involves a shift in the selective regime, capable of altering brain circuits favoring the dynamic modulation of motivation and reward sensitivity over augmented aggression and stress responses.

Indexed as

DomesticationFinchesGenomicsSongbirdsAnimalsMalePhenotypeVocalization, Animal

Identifiers

PMID40461714
PMCPMC12134088

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.