Evidence map›Paper›PMID 40461556›Full record

ArticleScientific reports2025

Caloric restriction mimetic 2-deoxyglucose alters metabolic and transcriptomic phenotype in association with changes in chromatin accessibility in human astrocytes.

Matthew Spencer, Jacqueline R Kulbe, Vikram Venkatesh, Anna Laird, Mary Ford, Sydney O'Brien, Ali Boustani, Johannes C M Schlachetzki, Jerel Adam Fields

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Matthew SpencerDepartment of Psychiatry, University of California, San Diego, CA, USA.
Jacqueline R KulbeDepartment of Psychiatry, University of California, San Diego, CA, USA.
Vikram VenkateshDepartment of Neurosciences, University of California, San Diego, CA, USA.
Anna LairdDepartment of Psychiatry, University of California, San Diego, CA, USA.
Mary FordDepartment of Psychiatry, University of California, San Diego, CA, USA.
Sydney O'BrienDepartment of Neurosciences, University of California, San Diego, CA, USA.
Ali BoustaniDepartment of Psychiatry, University of California, San Diego, CA, USA.
Johannes C M SchlachetzkiDepartment of Neurosciences, University of California, San Diego, CA, USA. jschlachetzki@health.ucsd.edu.
Jerel Adam FieldsDepartment of Psychiatry, University of California, San Diego, CA, USA. jafields@health.ucsd.edu.

Funding

UCSD Shiley-Marcos Alzheimer's Disease Research Center P30P30AG062429 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DOUGLAS R GALASKO · 2019 to 2026
$34.9M
The role of TFAM alterations in HIV- and ART-induced mitochondrial dysfunction in the brainR01MH128108 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jerel Adam Fields · 2022 to 2026
$2.3M
Mechanisms controlling HIV latency and pathogenesis in microgliaR21MH134401 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SCHLACHETZKI, JOHANNES CAROLUS MAGNUS, YANG, XIAOXU · 2023 to 2023
$435k
NIA NIH HHS P30 AG062429NIMH NIH HHS MH128108NIMH NIH HHS MH134401NIMH NIH HHS R01 MH128108NIMH NIH HHS R21 MH134401
6 · The paper itself

Abstract

Caloric restriction and ketogenic diets may modify the progression of neurological disorders, including HIV-associated neurological disorders and Alzheimer's disease, in part by influencing astrocyte function. This study examines how metabolic substrate availability affects metabolic processes and gene expression in human astrocytes. We exposed astrocytes to the glycolysis inhibitor 2-deoxyglucose (2-DG), to mimic caloric restriction, prior to stimulation with interleukin-1β and measured extracellular flux using the Seahorse ® platform. We next analyzed gene expression and chromatin accessibility changes using RNA-sequencing and ATAC-sequencing, respectively. Finally, we tested the effects of glucose deprivation and the ketone body β-hydroxybutyrate (BHB) on inflammatory gene expression. 2-DG reduced oxygen consumption rate and extracellular acidification rate in the presence of IL-1β, while concomitantly decreasing expression of pro-inflammatory cytokines TNF, IL-6, and C3. These changes were linked to altered chromatin structure. The metabolic substrate β-hydroxybutyrate was associated with reduced cytokine expression compared to glucose. Inhibition of glycolysis attenuated IL-1β-induced inflammation and gene expression changes and altered chromatin architecture. Both glucose deprivation and BHB treatment reduced inflammatory cytokine expression, with additive effects when combined with 2-DG. These results suggest that targeting glycolysis could provide therapeutic strategies for treating neurological diseases through modulation of astrocyte-driven inflammation.

Indexed as

AstrocytesCaloric RestrictionChromatinDeoxyglucoseTranscriptome3-Hydroxybutyric AcidCells, CulturedCytokinesGlucoseGlycolysisHumansInterleukin-1beta3-Hydroxybutyric AcidChromatinCytokinesDeoxyglucoseGlucoseInterleukin-1betaAstrocytesCaloric restrictionChromatin accessibilityGlycolysisImmunometabolismNeuroinflammation

Identifiers

PMID40461556
PMCPMC12134135

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.