Evidence map›Paper›PMID 40461463›Full record

ArticleScientific reports2025

A reliable prognostic model for hepatocellular carcinoma using neutrophil extracellular traps and immune related genes.

Defeng Yuan, Feng Zhang, Pengfei Lv, Jun Zhu, Haiwei Zhang, Zhengcong Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Defeng Yuan *The eleventh Ward of General Surgery, The First Hospital of Lanzhou University, Lanzhou, 730000, Gansu Province, China.
Feng Zhang *The third ward of Medical Oncology, The First Hospital of Lanzhou University, Lanzhou, 730000, Gansu Province, China.
Pengfei Lv *The eleventh Ward of General Surgery, The First Hospital of Lanzhou University, Lanzhou, 730000, Gansu Province, China.
Jun ZhuDepartment of Pathology, The First Hospital of Lanzhou University, Donggang District, Lanzhou, 730000, Gansu Province, China.
Haiwei Zhang *The eleventh Ward of General Surgery, The First Hospital of Lanzhou University, Lanzhou, 730000, Gansu Province, China.
Zhengcong ZhangThe eleventh Ward of General Surgery, The First Hospital of Lanzhou University, Lanzhou, 730000, Gansu Province, China. 120220903471@lzu.edu.cn.ORCID https://orcid.org/0009-0000-4616-4332

Funding

The Natural Science Foundation of Gansu Province 21JR11RA080The University Teachers Innovation Fund Project of Gansu Province 2023B-002
6 · The paper itself

Abstract

Neutrophil extracellular traps (NETs) and immunity play critical roles in liver hepatocellular carcinoma (LIHC) progression, but their mechanisms remain unclear. This study explored the potential of NETs-related genes (NETs-RGs) and immune-related genes (IRGs) as prognostic markers for LIHC. LIHC transcriptome data and IRGs were obtained from public databases, and NETs-RGs were derived from prior research. Differentially expressed genes (DEGs) intersecting with key module genes were identified, followed by Cox regression analysis and machine learning to determine prognostic genes. A risk prediction model and nomogram were constructed and validated. Enrichment analysis, immune infiltration, and drug sensitivity studies were conducted to explore underlying mechanisms. Reverse transcription quantitative PCR (RT-qPCR) was used to validate findings. Five prognostic genes-HMOX1, MMP9, TNFRSF4, MMP12, and FLT3-were identified. A risk model and nomogram demonstrated strong predictive ability. Gene set enrichment analysis revealed pathways related to retinol metabolism and cytochrome P450 drug metabolism in different risk groups. Immune infiltration analysis showed regulatory T cells positively correlated with MDSCs, which were directly associated with the five genes. Drug sensitivity analysis identified 74 drugs with differential sensitivity between risk groups; axitinib showed lower sensitivity in high-risk patients, while ABT-888 showed higher sensitivity. RT-qPCR confirmed reduced HMOX1 and FLT3 expression in LIHC tissues, while MMP9 and TNFRSF4 were upregulated. This study developed a robust predictive model for LIHC prognosis, offering valuable insights for clinical management and personalized treatment strategies.

Indexed as

Carcinoma, HepatocellularExtracellular TrapsLiver NeoplasmsBiomarkers, TumorFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleNomogramsPrognosisTranscriptomeBiomarkers, TumorHepatocellular carcinomaImmunityNeutrophil extracellular trapsPrognostic gene

Identifiers

PMID40461463
PMCPMC12134221

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.