Evidence map›Paper›PMID 40461259›Full record

ArticleEnvironmental microbiology reports2025

Differential Expression of Core Metabolic Functions in Candidatus Altiarchaeum Inhabiting Distinct Subsurface Ecosystems.

Sarah P Esser, Victoria Turzynski, Julia Plewka, Julia Nuy, Carrie J Moore, Indra Banas, André R Soares, Janey Lee, Tanja Woyke, Alexander J Probst

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Environmental microbiology reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sarah P EsserEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.ORCID https://orcid.org/0000-0001-6772-8635
Victoria TurzynskiEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.
Julia PlewkaEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.
Julia NuyEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.
Carrie J MooreEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.
Indra BanasEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.
André R SoaresEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.
Janey LeeDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Tanja WoykeDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Alexander J ProbstEnvironmental Metagenomics, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany.ORCID https://orcid.org/0000-0002-9392-6544

Funding

Aker B.P.: GeneOil ProjectDOE Office of Science User FacilityMinisterium für Kultur und Wissenschaft des Landes Nordrhein- Westfalen ("Nachwuchsgruppe Dr. Alexander Probst") and the German Research Foundation DFG PR1603/2-1the Office of Science of the U.S. Department of Energy operatedU.S. Department of Energy Joint Genome Institute
6 · The paper itself

Abstract

Candidatus Altiarchaea are widespread across aquatic subsurface ecosystems and possess a highly conserved core genome, yet adaptations of this core genome to different biotic and abiotic factors based on gene expression remain unknown. Here, we investigated the metatranscriptome of two Ca. Altiarchaeum populations that thrive in two substantially different subsurface ecosystems. In Crystal Geyser, a high-CO

Indexed as

EcosystemGene Expression ProfilingGenome, ArchaealGermanyGroundwaterMultigene FamilySymbiosisTranscriptomearchaeametatranscriptomicssubsurface ecosystems

Identifiers

PMID40461259
PMCPMC12133352

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.