Evidence map›Paper›PMID 40457237›Full record

ArticleBMC plant biology2025

Transcript profiling of plastid ferrochelatase two mutants reveals that chloroplast singlet oxygen signals lead to global changes in RNA profiles and are mediated by Plant U-Box 4.

Snigdha Rai, Matthew D Lemke, Anika M Arias, María F Gómez Méndez, Katayoon Dehesh, Jesse D Woodson

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Snigdha RaiThe School of Plant Sciences, University of Arizona, 303 Forbes Hall, 1140 E. South Campus Drive, Tucson, AZ, 85721-0036, USA.ORCID http://orcid.org/0000-0003-3428-8746
Matthew D LemkeThe School of Plant Sciences, University of Arizona, 303 Forbes Hall, 1140 E. South Campus Drive, Tucson, AZ, 85721-0036, USA.ORCID http://orcid.org/0000-0002-9680-0656
Anika M AriasThe School of Plant Sciences, University of Arizona, 303 Forbes Hall, 1140 E. South Campus Drive, Tucson, AZ, 85721-0036, USA.ORCID http://orcid.org/0009-0008-8025-4153
María F Gómez MéndezDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0002-2107-5875
Katayoon DeheshDepartment of Botany and Plant Sciences, Institute for Integrative Genome Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0002-9312-8032
Jesse D WoodsonThe School of Plant Sciences, University of Arizona, 303 Forbes Hall, 1140 E. South Campus Drive, Tucson, AZ, 85721-0036, USA. jessewoodson@arizona.edu.ORCID http://orcid.org/0000-0002-5463-5146

Funding

Graduate Training in Biochemistry and Molecular BiologyT32GM136536 · NIGMS · UNIVERSITY OF ARIZONA · PI Andrew Paul Capaldi, FRANS E TAX · 2020 to 2026
$2.4M
National Science Foundation 2104365NIGMS NIH HHS T32 GM136536NIH HHS T32 GM136536U.S. Department of Energy DE-SC0019573
6 · The paper itself

Abstract

backgroundIn response to environmental stresses, chloroplasts generate reactive oxygen species, including singlet oxygen (

resultsTo gain mechanistic insights into

conclusionsTogether, this work demonstrates that in fc2 plants,

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastsFerrochelataseSinglet OxygenCyclopentanesGene Expression ProfilingGene Expression Regulation, PlantMutationPlastidsSignal TransductionTranscriptomeArabidopsis ProteinsCyclopentanesFerrochelataseSinglet OxygenAbiotic stressArabidopsis thalianaChloroplastJasmonic acidProgrammed cell deathReactive oxygen speciesSalicylic acidSinglet oxygen

Identifiers

PMID40457237
PMCPMC12131553

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.