Evidence map›Paper›PMID 40456773›Full record

ArticleScientific data2025

Full-length transcriptomes of 25 grassland plant species.

Chongyi Jiang, Zixia Huang, Cynthia Meizoso, Gaby Kumpfmüller, Jochen B W Wolf, Holger Schielzeth

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chongyi JiangPopulation Ecology Group, Institute of Ecology and Evolution, Friedrich Schiller University, Jena, Germany. chongyi.jiang@uni-jena.de.ORCID http://orcid.org/0009-0003-8713-7711
Zixia HuangSchool of Biology and Environmental Science, University College Dublin, Dublin, Ireland.ORCID http://orcid.org/0000-0002-1298-0486
Cynthia MeizosoDivision of Evolutionary Biology, Faculty of Biology, LMU Munich, Grosshaderner Str. 2, 82152, Planegg-Martinsried, Germany.
Gaby KumpfmüllerDivision of Evolutionary Biology, Faculty of Biology, LMU Munich, Grosshaderner Str. 2, 82152, Planegg-Martinsried, Germany.
Jochen B W Wolf *Division of Evolutionary Biology, Faculty of Biology, LMU Munich, Grosshaderner Str. 2, 82152, Planegg-Martinsried, Germany.
Holger Schielzeth *Population Ecology Group, Institute of Ecology and Evolution, Friedrich Schiller University, Jena, Germany.ORCID http://orcid.org/0000-0002-9124-2261

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 422440326
6 · The paper itself

Abstract

Grasslands are essential, biodiverse ecosystems providing critical ecosystem services. Despite their ecological and economic value, transcriptomic resources for wild grassland species to support eco-evolutionary and functional genomic studies remain limited. Here, we present full-length transcriptomes for shoot tissue from 25 wild grassland plant species collected from a long-term biodiversity experiment (the Jena Experiment). Using PacBio Iso-Seq technology, we generated a total of 522.45 million subreads, which were assembled into unique transcripts for each species independently. This resulted in an average of 49,180 transcripts per species, of which 68.6% were successfully annotated using the Swiss-Prot database. Furthermore, 40.3% of the transcripts contained complete open reading frames (ORFs), while 31.4% had incomplete ORFs. More than 36.8% of the transcripts were identified as non-coding RNAs. On average, 5.08% of the bases across all transcriptomes were flagged as repetitive elements. This dataset offers a valuable full-length transcriptomic resource for studying gene expression, alternative splicing, and evolutionary patterns in grassland species, paving the way for future research in functional genomics and conservation.

Indexed as

GrasslandPlantsTranscriptomeOpen Reading FramesRNA, UntranslatedRNA, Untranslated

Identifiers

PMID40456773
PMCPMC12130298

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.