Evidence map›Paper›PMID 40456408›Full record

ArticleThe Journal of nutrition2025

Late-Life Short-Term Dietary Restriction Improves Intestinal Stem Cell Function and Alters Intestinal Stem Cell Deoxyribonucleic Acid Methylation in Mice.

Kavitha Kurup, Michael Chan, Eric Moore, Michelle Ranjo-Bishop, Kevin Pham, David R Stanford, Willard M Freeman, Archana Unnikrishnan

Abstract read
In one paragraph

Article in The Journal of nutrition, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kavitha KurupDepartment of Biochemistry and Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States.
Michael ChanDepartment of Biochemistry and Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States; Harold Hamm Diabetes Center, Oklahoma City, OK, United States.
Eric MooreDepartment of Biochemistry and Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States.
Michelle Ranjo-BishopDepartment of Biochemistry and Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States.
Kevin PhamGenes and Human Disease Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, United States; Oklahoma City Veterans Affairs Medical Center, Oklahoma City, OK, United States.
David R StanfordGenes and Human Disease Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, United States; Oklahoma City Veterans Affairs Medical Center, Oklahoma City, OK, United States.
Willard M FreemanDepartment of Biochemistry and Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States; Genes and Human Disease Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, United States; Oklahoma City Veterans Affairs Medical Center, Oklahoma City, OK, United States.
Archana UnnikrishnanDepartment of Biochemistry and Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, United States; Harold Hamm Diabetes Center, Oklahoma City, OK, United States; Oklahoma Center for Geroscience and Brain Aging, Oklahoma City, OK, United States. Electronic address: archana-unnikrishnan@ouhsc.edu.

Funding

Visualizing insulin actions on neuronal metabolism and function using fluorescent biosensorsP20GM125528 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Sreemathi Logan · 2019 to 2026
$17.8M
Targeted DNA Methylation and Mitochondrial Heteroplasmy CoreP30AG050911 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Matthew John Hart · 2015 to 2026
$13.9M
Sex divergence and cell specificity of age-related hippocampal DNA modificationsR01AG059430 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI FREEMAN, WILLARD M · 2019 to 2023
$2.7M
Role of DNA Methylation in Dietary Restriction mediated insulin sensitivityK01AG056655 · NIA · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI UNNIKRISHNAN, ARCHANA · 2018 to 2022
$653k
BLRD VA I01 BX003906BLRD VA IK6 BX006033NIA NIH HHS K01 AG056655NIA NIH HHS P30 AG050911NIA NIH HHS R01 AG059430NIGMS NIH HHS P20 GM125528
6 · The paper itself

Abstract

backgroundIntestinal regenerative capacity declines with age due to the declining intestinal stem cell (ISC) function. Dietary restriction (DR), the most robust anti-aging intervention to date, has been shown to improve ISC function in young mice.

objectivesThe goal of this study is to evaluate the effect of short-term DR (stDR) on ISC function when implemented late in life.

methodsTwo- and twenty-one-month-old male C57BL/6 mice, fed on National Institutes of Health-31 (NIH-31), an open-source, unpurified, natural ingredient diet, were subjected to ad libitum feeding or stDR (40% DR for 4-mo) with 6 mice/age/treatment. Effects of age and stDR on ISC (leucine-rich repeat-containing G-protein coupled receptor 5) function was evaluated using in vitro enteroid-forming assay followed by ribonucleic acid sequencing (RNA-seq) analysis (using strand next-generation sequencing analysis software) and oxidative whole-genome bisulfite sequencing for deoxyribonucleic acid (DNA) methylation (using the R package methyl kit). Statistical analysis was conducted, where appropriate, using a 1-way analysis of variance with multiple testing corrections or Student's t-test.

resultsOur data shows that stDR increases enteroid formation when implemented late in life by ≥10-fold (P ≤ 0.05). RNA-Seq analysis identified 38 genes not commonly linked to ISC function but showed a 2-fold change (P ≤ 0.05) with age, which was prevented by stDR. Finally, evaluation of the methylation status of selected genes from RNA-seq (Slc28a3, Ly9, Cd2, Platr4) showed changes in methylation at Cytosine-Guanine (CG) sites in the cis-acting regions of the genes with age which were also prevented by stDR (P ≤ 0.05).

conclusionsOur study shows for the first time that late-life stDR can improve the function of leucine-rich repeat-containing G-protein coupled receptor 5 ISCs from old mice. These data suggest that late-life nutritional strategies might be effective in improving gut function that declines with age and reduce the risk of age-related intestinal disorders. Our study also provides the first data showing that DNA methylation may play a role in the ability of DR to improve ISC function.

Indexed as

Caloric RestrictionDNA MethylationIntestinesStem CellsAgingAnimalsMaleMiceMice, Inbred C57BLagingDNA methylationenteroidsintestinal stem cellslate-life DRshort-term dietary restriction

Identifiers

PMID40456408
PMCPMC12346696

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.