Evidence map›Paper›PMID 40453935›Full record

ReviewVeterinary world2025

Analysis of genetic diversity and phylogenetic relationships among Indonesian native cattle breeds using microsatellite markers: A review.

Rini Hastarina, Agung Purnomoadi, Sutopo Sutopo, Dela Ayu Lestari, Fatmawati Mustofa, Putu Novia Gariri, Pupus Galau Prahara, Firda Tasya Kamila, Syaddad Verahry Philco, Maulida Arkaan Muhammad Da'i and 1 more

Abstract readReview
In one paragraph

Review in Veterinary world, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rini HastarinaDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Agung PurnomoadiDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Sutopo SutopoDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Dela Ayu LestariDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Fatmawati MustofaDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Putu Novia GaririDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Pupus Galau PraharaDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Firda Tasya KamilaDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Syaddad Verahry PhilcoDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Maulida Arkaan Muhammad Da'iDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.
Asep SetiajiDepartment of Animal Science, Faculty of Animal and Agricultural Sciences, Universitas Diponegoro, Tembalang Campus, Semarang, 50275 Central Java, Indonesia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Indonesia is home to a diverse array of native cattle breeds - such as Aceh, Bali, Madura, and Sumba Ongole - that are uniquely adapted to their regional environments and integral to the country's agricultural and cultural heritage. This review synthesizes current research on the genetic diversity and phylogenetic relationships of Indonesian native cattle using microsatellite markers, a robust molecular tool for assessing genetic variation. Analysis of multiple studies reveals that geographical isolation, selective breeding, and human-mediated practices have shaped the genetic structure of these populations. Notably, Bali and Madura cattle exhibit distinctive genetic clusters reflecting island isolation and long-standing breeding traditions. Findings also underscore concerns regarding genetic erosion caused by uncontrolled crossbreeding with exotic breeds, which threatens local adaptability and increases the risk of inbreeding. Key genetic parameters - including allele richness, heterozygosity, and inbreeding coefficients - suggest varying degrees of genetic integrity among the breeds, with several populations showing signs of inbreeding depression. Microsatellite data further demonstrate clear phylogenetic separation among breeds, offering valuable insights for breed identification and conservation planning. The primary strength of this review lies in its comprehensive integration of genetic studies across diverse breeds and islands, providing a national-scale perspective. However, limitations include the underrepresentation of certain breeds and reliance on microsatellite data without integration of high-resolution genomic tools. Future research should incorporate advanced molecular techniques e.g., sngle-nucleotide polymorphism arrays and whole-genome sequencing) and longitudinal monitoring to inform targeted conservation strategies. This review advocates for the incorporation of molecular genetic data into national breeding and conservation programs. Strengthening such initiatives is essential for preserving Indonesia's indigenous cattle as valuable genetic resources for climate-resilient, sustainable livestock production.

Indexed as

breed conservationgenetic diversityinbreedingIndonesian cattlemicrosatellite markersphylogeneticssustainable livestock

Identifiers

PMID40453935
PMCPMC12123280

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.