Evidence map›Paper›PMID 40453064›Full record

ArticleThe journal of machine learning for biomedical imaging2024

Dimensionality Reduction and Nearest Neighbors for Improving Out-of-Distribution Detection in Medical Image Segmentation.

McKell Woodland, Nihil Patel, Austin Castelo, Mais Al Taie, Mohamed Eltaher, Joshua P Yung, Tucker J Netherton, Tiffany L Calderone, Jessica I Sanchez, Darrel W Cleere and 6 more

Abstract read
In one paragraph

Article in The journal of machine learning for biomedical imaging, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. A Real-World Evaluation of Failure Detection for Liver CT Segmentation.medRxiv : the preprint server for health sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

McKell WoodlandThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0000-0003-0995-3695
Nihil PatelThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0000-0002-5382-1983
Austin CasteloThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0009-0009-3015-3570
Mais Al TaieThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0009-0000-9298-6644
Mohamed EltaherThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0009-0008-2078-4718
Joshua P YungThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0000-0003-3752-5997
Tucker J NethertonThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0000-0003-1583-7121
Tiffany L CalderoneThe University of Texas MD Anderson Cancer Center, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0000-0003-4404-5342
Jessica I SanchezThe University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0009-0006-1042-5661
Darrel W CleereThe University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Ahmed ElsaieyThe University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Nakul GuptaThe University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-2413-2193
David VictorHouston Methodist Hospital, Houston, TX, USA.ORCID 0000-0003-1414-3128
Laura BerettaThe University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-2054-684X
Ankit B PatelBaylor College of Medicine, Houston, TX, USA, Rice University, Houston, TX, USA.ORCID 0000-0001-9678-496X
Kristy K BrockThe University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0001-9364-5040

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIANE BODURKA · 1985 to 2026
$290.8M
Early Detection of Hepatocellular CarcinomaR01CA195524 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LAURA BERETTA, David Fuentes · 2016 to 2026
$6.5M
Optimization and Evaluation of Anatomical Models of Liver Radiation ResponseR01CA221971 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BROCK, KRISTY · 2018 to 2022
$1.8M
Anatomical Modeling to Improve the Precision of Image Guided Liver AblationR01CA235564 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BROCK, KRISTY, ODISIO, BRUNO C · 2019 to 2023
$1.7M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA195524NCI NIH HHS R01 CA221971NCI NIH HHS R01 CA235564
6 · The paper itself

Abstract

Clinically deployed deep learning-based segmentation models are known to fail on data outside of their training distributions. While clinicians review the segmentations, these models tend to perform well in most instances, which could exacerbate automation bias. Therefore, detecting out-of-distribution images at inference is critical to warn the clinicians that the model likely failed. This work applied the Mahalanobis distance (MD) post hoc to the bottleneck features of four Swin UNETR and nnU-net models that segmented the liver on T1-weighted magnetic resonance imaging and computed tomography. By reducing the dimensions of the bottleneck features with either principal component analysis or uniform manifold approximation and projection, images the models failed on were detected with high performance and minimal computational load. In addition, this work explored a non-parametric alternative to the MD, a k-th nearest neighbors distance (KNN). KNN drastically improved scalability and performance over MD when both were applied to raw and average-pooled bottleneck features. Our code is available at https://github.com/mckellwoodland/dimen_reduce_mahal.

Indexed as

Mahalanobis distanceNearest NeighborsOut-of-distribution detectionPrincipal component analysisUniform manifold approximation and projection

Identifiers

PMID40453064
PMCPMC12123533

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.