Evidence map›Paper›PMID 40452054›Full record

ArticleBMC plant biology2025

Genome-wide identification of NHX gene family and effects of salicylic acid in regulating antioxidant activity as well as nutrients deposition under salt stress in three Brassica species.

Rana Muhammad Amir Gulzar, Raheel Munir, Zhang Ren Yi, Nazia Jan, Abdul Rauf, Zohaib Kaleem, Muhammad Haseeb Javaid, Mumtaz Ali Saand, Ali El-Keblawy, Mohamed S Sheteiwy and 1 more

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Article
  3. Genome-Wide Analysis of theInternational journal of molecular sciences · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genome-Wide Identification ofInternational journal of molecular sciences · 2026
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rana Muhammad Amir GulzarInstitute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China.ORCID http://orcid.org/0000-0003-2395-6534
Raheel MunirInstitute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China.
Zhang Ren YiInstitute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China.
Nazia JanInstitute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China.
Abdul RaufDepartment of Horticulture, Bahauddin Zakariya University, Punjab, Pakistan.
Zohaib KaleemInstitute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China.
Muhammad Haseeb JavaidInstitute of Vegetable Science, Zhejiang University, Hangzhou, 310058, China.
Mumtaz Ali SaandDepartment of Botany, Shah Abdul Latif University, Khairpur, Sindh, 66020, Pakistan. mumtazsaand@gmail.com.
Ali El-KeblawyDepartment of Applied Biology, Faculty of Science, University of Sharjah, Sharjah, 27272, United Arab Emirates.
Mohamed S SheteiwyDepartment of Integrative Agriculture, College of Agriculture and Veterinary Medicine, United Arab Emirates University, P.O. Box 15551, Al Ain, Abu Dhabi, United Arab Emirates. msalah@uaeu.ac.ae.
Zaid UlhassanInstitute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China. 11616086@zju.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Na+/H+ antiporter (NHX) gene subfamily is essential for plant adaptation to salt stress, contributing significantly to ion homeostasis. These antiporters play crucial function in various biological processes by regulating Na+ and H+ balance within plant cells. Yet their genomic features and roles of salicylic acid (SA) in regulating them, activating antioxidant defense mechanisms as well as nutrients acquisition under salt stress conditions remain largely unknown in many crop species.

resultsIn this study, we identified the NHX gene family members of three Brassicaceae species including Brassica napus, Brassica rapa and Brassica oleracea and analyzed the expression patterns of NHX genes in response to salt stress and phytohormonal application (SA). Comprehensive computational analyses, encompassing domain and motif prediction, cellular localization, cis-regulatory elements (CREs), and post-translational modification (PTM) sites revealed distinct group-specific characteristics within the NHX gene family. These characteristics included chromosomal distribution, motif composition, exon count and protein length (amino acids). qRT-PCR analysis depicted significantly induced expression of NHXs, specifically, BnNHX7, BraNHX6 and BoNHX6 (4 ~ 6 folds) using different concentrations of NaCl (100 mM and 200 mM) and SA (10 mg/L and 20 mg/L) at different periods of time. SA induced antioxidant enzymatic activity (SOD 3 ~ 4 folds, POD 2 ~ 3 folds, CAT 1 ~ 2 folds and APX 11 ~ 12 folds), upregulated antioxidant genes (SOD, POD, APX, CAT) by 3 ~ 5 folds under salt stress, and improved nutrient acquisition in all respective Brassicaceae species.

conclusionsWe have conducted the first molecular characterization of NHX genes in three Brassica species, revealing their dual role in salt stress adaptation through ion homeostasis and salicylic acid induced antioxidant regulation, thus identifying promising targets for crop improvement. CLINICAL TRIAL NUMBER: Not applicable.

Indexed as

AntioxidantsBrassicaPlant ProteinsSalicylic AcidSalt StressSodium-Hydrogen ExchangersGene Expression Regulation, PlantMultigene FamilyPhylogenyAntioxidantsPlant ProteinsSalicylic AcidSodium-Hydrogen ExchangersBrassicaceaeCREsNHXsPlant stress toleranceqRT-PCRSalicylic acid

Identifiers

PMID40452054
PMCPMC12128245

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.