Evidence map›Paper›PMID 40451994›Full record

ArticleBiodegradation2025

Pesticide degradation capacity of a novel strain belonging to Serratia sarumanii with its genomic profile.

Gülperi Alatassi, Ömür Baysal, Ragıp Soner Silme, Gülçin Pınar Örnek, Hakan Örnek, Ahmet Can

Abstract read
In one paragraph

Article in Biodegradation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gülperi Alatassi *Molecular Microbiology Unit, Department of Molecular Biology and Genetics, Faculty of Science, Muğla Sıtkı Koçman University, Kötekli, Muğla, Turkey.ORCID 0000-0002-0221-362X
Ömür Baysal *Molecular Microbiology Unit, Department of Molecular Biology and Genetics, Faculty of Science, Muğla Sıtkı Koçman University, Kötekli, Muğla, Turkey. omurbaysal@mu.edu.tr.ORCID 0000-0001-5104-0983
Ragıp Soner SilmeCenter for Research and Practice in Biotechnology and Genetic Engineering, Istanbul University, Fatih, 34134, Istanbul, Turkey.ORCID 0000-0001-6547-3747
Gülçin Pınar ÖrnekRepublic Turkey Ministry of Agriculture and Forestry, Directorate of Izmir Food Control Laboratory, Izmir, Turkey.ORCID 0009-0006-1413-9785
Hakan ÖrnekRepublic Turkey Ministry of Agriculture and Forestry, Directorate of Plant Protection, Reseach Institute Bornova-Izmir, Izmir, Turkey.ORCID 0000-0001-9747-4672
Ahmet CanMolecular Microbiology Unit, Department of Molecular Biology and Genetics, Faculty of Science, Muğla Sıtkı Koçman University, Kötekli, Muğla, Turkey.ORCID 0000-0003-2197-0885

Funding

Bilimsel Araştirma Projeleri Birimi, Istanbul Üniversitesi BYP-2018-27942
6 · The paper itself

Abstract

The extensive use of pesticides in agricultural practices, coupled with the potential for microbial biodegradation of these chemicals, plays a critical role in environmental sustainability. This study aimed to identify microorganisms capable of degrading the most commonly used pesticides in agricultural fields within our region. In vitro screening revealed a microorganism with a broad pesticide degradation spectrum, and whole-genome sequencing further indicated the presence of genomic regions associated with pesticide degradation, a finding that was validated by LC-MS/MS analysis. Detailed genomic analysis, including ribosomal multi-locus sequence typing (rMLST), identified the microorganism as Serratia sarumanii. Our results also demonstrated that the introduction of this strain into the environment not only promoted the degradation of specific pesticides but also enhanced the efficacy of certain other pesticides at low concentrations through a synergistic interaction. To further substantiate the biodegradation capabilities of the strain, LC-MS/MS chromatographic analysis of 25 pesticide-active chemicals confirmed that Serratia sarumanii effectively biodegrades several pesticide active ingredients, including fludioxonil, fenhexamid, pyrimethanil, and spirodiclofen. These findings underscore the biodegradative potential of Serratia sarumanii and its promising application in the bioremediation of pesticide-contaminated soils.

Indexed as

Genome, BacterialPesticidesSerratiaSoil PollutantsBiodegradation, EnvironmentalSoil MicrobiologyTandem Mass SpectrometryPesticidesSoil PollutantsBioremediationLC–MS/MSMicrobial degradationSerratia sarumanii GBS19Whole-genome sequence analysis

Identifiers

PMID40451994
PMCPMC12127232

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.