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ArticleMolecular biology reports2025

The complete mitochondrial genome of Pleurocorallium inutile (Octocorallia: Scleralcyonacea: Coralliidae).

Kenji Takata, Masanori Nonaka, Fei Xia, Taisei Kikuchi, Kodai Gibu, Nina Yasuda

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Article in Molecular biology reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Kenji TakataGraduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Tokyo, Japan.
Masanori NonakaOkinawa Churashima Foundation Research Institute, Motobu, Okinawa, Japan.
Fei XiaGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
Taisei KikuchiGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
Kodai GibuGraduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Tokyo, Japan.
Nina YasudaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Tokyo, Japan. 27yasuda@g.ecc.u-tokyo.ac.jp.

Funding

Japan Society for the Promotion of Science 22KJ1108Japan Society for the Promotion of Science 23H00529, 24H00079
6 · The paper itself

Abstract

backgroundAlthough the genus Pleurocorallium contains an economically valuable species, limited genetic information is available. Here, we report the complete mitochondrial genome sequence of Pleurocorallium inutile. In Japan, this species is known as damesango, meaning "useless coral", because it has no commercial value when caught as a bycatch during precious coral harvesting. Although several species of Pleurocorallium can be distinguished morphologically, some cannot be differentiated using the limited number of characterized genetic regions, such as eight mitochondrial and elongation factor genes. P. inutile is one such species, and therefore, analyzing its complete mitochondrial genome will be useful for identifying its phylogenetic status, distinguishing it from other commercially important species, and providing insights into the evolution of octocoral mitochondrial genes. METHODS AND

resultsThe 18,822 bp mitochondrial genome of P. inutile consists of 14 protein-coding genes, two ribosomal RNA (rRNA) genes (rnL and rnS), and one tRNA gene (trnM). Consistent with previous studies, P. inutile shares the same gene arrangement as other Pleurocorallium species, while exhibiting distinct gene arrangements compared to closely related genera, such as Corallium and Hemicorallium. A phylogenetic tree based on protein-coding and rRNA genes from currently available Coralliidae species indicated that Pleurocorallium exhibited greater within-genus genetic distances than Corallium and Hemicorallium.

conclusionsOur study clearly distinguished P. inutile from other species using published mitochondrial genomes. This sequence information will be useful for accurate biodiversity assessments and understanding octocoral mitochondrial gene evolution in the future.

Indexed as

AnthozoaGenome, MitochondrialAnimalsGene OrderGenes, MitochondrialPhylogenyRNA, RibosomalRNA, TransferSequence Analysis, DNARNA, RibosomalRNA, TransferDeep-sea coralGenome skimmingMitogenome assemblyPrecious coral

Identifiers

PMID40450612
PMCPMC12127222

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