Evidence map›Paper›PMID 40450179›Full record

ArticleNpj viruses2025

Ultrastructural and transcriptional changes during a giant virus infection of a green alga.

Andrian P Gajigan, Christopher R Schvarcz, Cecilia Conaco, Kyle F Edwards, Grieg F Steward

Abstract read
In one paragraph

Article in Npj viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrian P GajiganDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, HI, USA. agajigan@hawaii.edu.ORCID http://orcid.org/0000-0001-9888-3718
Christopher R SchvarczDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, HI, USA.ORCID http://orcid.org/0000-0003-3789-2033
Cecilia ConacoMarine Science Institute, University of the Philippines Diliman, Quezon City, Philippines.ORCID http://orcid.org/0000-0002-3594-2810
Kyle F EdwardsDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, HI, USA.ORCID http://orcid.org/0000-0002-0661-3903
Grieg F StewardDepartment of Oceanography, University of Hawai'i at Mānoa, Honolulu, HI, USA. grieg@hawaii.edu.ORCID http://orcid.org/0000-0001-5988-0522

Funding

National Science Foundation OCE #1559356 and OIA #1736030
6 · The paper itself

Abstract

The genome of Oceanusvirus kaneohense isolate, Tetraselmis virus 1 (TetV-1), was previously sequenced, but little was known about its infection cycle. We determined the eclipse period (4-8 h), latent period (16 h), and burst size (~1000), and observed ultrastructural changes in the host during infection. Putative viral factories and inclusion bodies appear in the cytoplasm by 8 and 16 h post-infection, respectively. Of 830 viral transcripts detected, those related to transcription, DNA synthesis, and host immune repression appeared earlier (0.25 and 4 h), and virus structural genes appeared later (8-16 h). Host lipid metabolism and endocytosis-related transcripts were upregulated during the early phase, while protein modification genes were downregulated. In the later stages, host transcripts associated with basic cellular processes were relatively more common, while developmental genes became less so. Many highly expressed host and virus genes were of unknown function, highlighting a need for additional functional studies.

Identifiers

PMID40450179
PMCPMC12126595

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.