Evidence map›Paper›PMID 40450002›Full record

ArticleNature communications2025

The HP1 box of KAP1 organizes HP1α for silencing of endogenous retroviral elements in embryonic stem cells.

Nitika Gaurav, Ryan O'Hara, Usman Hyder, Weihua Qin, Cheenou Her, Hector Romero, Amarjeet Kumar, Maria J Marcaida, Rohit K Singh, Ruud Hovius and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Nitika Gaurav *Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0001-6567-758X
Ryan O'Hara *Cecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-0188-0316
Usman HyderDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-7655-1533
Weihua QinDepartment of Biology II, Ludwig-Maximilians-Universität München, München, Germany.
Cheenou HerDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA.
Hector RomeroDepartment of Biology, Technical University of Darmstadt, Darmstadt, Germany.ORCID http://orcid.org/0000-0002-2521-0034
Amarjeet KumarInstitute for Quantum Life Science, National Institutes for Quantum Science and Technology, Chiba, Japan.ORCID http://orcid.org/0000-0001-7740-9881
Maria J MarcaidaInstitute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-0663-5309
Rohit K SinghDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA.
Ruud HoviusInstitute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Karthik SelvamDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA.ORCID http://orcid.org/0000-0001-6140-0129
Jiuyang LiuDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA.
Sara MartireCecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-1570-3476
Yuhang YaoCecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0009-0006-5950-3245
Ashwini ChallaDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
Matteo Dal PeraroInstitute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-2973-3975
Beat FierzInstitute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-2991-3044
Hidetoshi KonoInstitute for Quantum Life Science, National Institutes for Quantum Science and Technology, Chiba, Japan.ORCID http://orcid.org/0000-0001-5729-8707
M Cristina CardosoDepartment of Biology, Technical University of Darmstadt, Darmstadt, Germany.ORCID http://orcid.org/0000-0001-8427-8859
Galia T DebelouchinaDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-6775-9415
Heinrich LeonhardtDepartment of Biology II, Ludwig-Maximilians-Universität München, München, Germany.ORCID http://orcid.org/0000-0002-5086-6449
Iván D'OrsoDepartment of Microbiology, The University of Texas Southwestern Medical Center, Dallas, TX, USA. Ivan.Dorso@UTSouthwestern.edu.ORCID http://orcid.org/0000-0002-1409-2351
Laura A BanaszynskiCecil H. and Ida Green Center for Reproductive Biology Sciences, The University of Texas Southwestern Medical Center, Dallas, TX, USA. laura.banaszynski@utsouthwestern.edu.ORCID http://orcid.org/0000-0002-5189-8848
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA. tatiana.kutateladze@cuanschutz.edu.ORCID http://orcid.org/0000-0001-7375-6990

Funding

UT Southwestern NORCP30DK127984 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI JONATHAN Charles COHEN · 2022 to 2026
$7.4M
Transcriptional regulatory mechanisms shaping HIV proviral fateR01AI114362 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI D'ORSO, IVAN · 2015 to 2024
$4.6M
Chromatin Dynamics and Genome RegulationR35GM124958 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Laura Banaszynski · 2017 to 2026
$4.4M
Structural biology of chromatin in vitro and in cellsR35GM138382 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Galia Debelouchina · 2020 to 2026
$2.8M
Mechanisms of p300 Activation During Pluripotency and Differentiation.R01HD109239 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI Laura Banaszynski · 2022 to 2026
$2.1M
Targeting acetylated histone H4 by MLL4R01AG067664 · NIA · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2021 to 2025
$2.1M
Molecular analysis of ASH1LR01CA252707 · NCI · UNIVERSITY OF COLORADO DENVER · PI TATIANA G KUTATELADZE · 2020 to 2026
$1.9M
The role of JADE in HBO complexesR01HL151334 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2023
$1.8M
Targeting acetylated histone H4 by MLL4R56AG067664 · NIA · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2020
$512k
Exploiting Oncogenic Chromatin Regulators in Cancer Initiation and ProgressionK00CA264296 · NCI · UNIVERSITY OF COLORADO DENVER · PI Usman Hyder · 2024 to 2026
$295k
Exploiting Oncogenic Chromatin Regulators in Cancer Initiation and ProgressionF99CA264296 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HYDER, USMAN · 2021 to 2022
$72k
NCI NIH HHS F99 CA264296NCI NIH HHS K00 CA264296NCI NIH HHS R01 CA252707NHLBI NIH HHS R01 HL151334NIAID NIH HHS R01 AI114362NIA NIH HHS R01 AG067664NIA NIH HHS R56 AG067664NICHD NIH HHS R01 HD109239NIDDK NIH HHS P30 DK127984NIGMS NIH HHS R35 GM124958NIGMS NIH HHS R35 GM138382U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA252707U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL151334U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) AG067664
6 · The paper itself

Abstract

Repression of endogenous retroviral elements (ERVs) is facilitated by KAP1 (KRAB-associated protein 1)-containing complexes, however the underlying mechanism remains unclear. Here, we show that binding of KAP1 to the major component of the heterochromatin spreading and maintenance network, HP1α, plays a critical role in silencing of repetitive elements. Structural, biochemical and mutagenesis studies demonstrate that the association of the HP1 box of KAP1 (KAP1

Indexed as

Chromosomal Proteins, Non-HistoneEmbryonic Stem CellsEndogenous RetrovirusesGene SilencingMouse Embryonic Stem CellsTripartite Motif-Containing Protein 28AnimalsChromatinChromobox Protein Homolog 5HeterochromatinHumansMiceMice, KnockoutProtein BindingChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinTRIM28 protein, humanTrim28 protein, mouseTripartite Motif-Containing Protein 28

Identifiers

PMID40450002
PMCPMC12126490

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.