ArticleScientific reports2025
Genome-wide identification and characterization of NBS-LRR gene family in tobacco (Nicotiana benthamiana).
Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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4 citing papers in PubMed.
- Dissection of Cell Death Induction byLife (Basel, Switzerland) · 2026Article
- Genome-Wide Identification and Systematic Analysis of theInternational journal of molecular sciences · 2026Article
- Genome-wide characterization of NBS-encoding genes inFrontiers in genetics · 2026Article
- Genetic mapping of Ascochyta blight resistance in an ILL6002 × Indianhead lentil mapping population.The plant genome · 2025Article
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7 authors.
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Abstract
Nicotiana benthamiana is an important model plant widely employed in plant virology, which involves the nucleotide binding site leucine-rich repeat (NBS-LRR) genes in disease resistance. In this study, firstly, 156 NBS-LRR homologs were identified by HMMsearch and they were divided into three clades in the phylogenetic tree by Clustal W, containing 5 TNL-type, 25 CNL-type, 23 NL-type, 2 TN-type, 41 CN-type, and 60 N-type proteins. Further, conserved motifs and domain composition were detected by MEME, showing 10 conserved motifs dispersed throughout the protein sequences in both typical- and irregular- type NBS-LRRs. Subcellular localization prediction by CELLO v.2.5 and Plant-mPLoc suggested 121 NBS-LRRs were located in cytoplasm, 33 in plasma membrane, and 12 in nucleus. And physicochemical characteristics by EXPASY ProtParam revealed common and unique features among the six types of NBS-LRR protein. Finally, gene structure analysis by TBtools exhibited most NBS-LRR genes were composed of either fewer or two introns. And regulatory cis-elements were assayed by PlantCARE, detecting 29 shared kinds and 4 kinds unique in irregular-type NBS-LRR genes, indicating potential upstream regulation factors. In summary, we provided important information on NBS-LRR genes and potential resources for improving disease resistance in tobacco, and will contribute to breeding programs for virus resistance.
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