Evidence map›Paper›PMID 40447597›Full record

ArticleNature communications2025

Allelic variations in GA20ox3 regulate fruit length and seed germination timing for high-altitude adaptation in Arabidopsis thaliana.

Xuemeng Gao, Shangling Lou, Yu Han, Yudan Zheng, Xiaoqin Feng, Han Zhang, Xuejing Liu, Jing Hou, Yingjun Yao, Yan Song and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Xuemeng GaoKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Shangling LouKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.ORCID http://orcid.org/0000-0001-6821-5137
Yu HanKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.ORCID http://orcid.org/0009-0005-5713-2906
Yudan ZhengKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Xiaoqin FengKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Han ZhangKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Xuejing LiuKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Jing HouKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Yingjun YaoKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Yan SongKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Meng LiuKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Shaobo GuKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Ruyun LiangKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Luna TanKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Landi FengKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Dong MeiKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.
Xinyao JiangKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.ORCID http://orcid.org/0009-0003-5670-7929
Pengchuan SunKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China.ORCID http://orcid.org/0000-0002-8999-4894
Huanhuan LiuKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China. liuhuanhuan85@163.com.ORCID http://orcid.org/0000-0003-1790-3073
Yuanzhong JiangKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China. jyz88623@126.com.ORCID http://orcid.org/0000-0002-2955-6155
Jianquan LiuKey Laboratory for Bio-resources and Eco-environment & Sichuan Zoige Alpine Wetland Ecosystem National Observation and Research Station, College of Life Sciences, Sichuan University, Chengdu, China. liujq@nwipb.ac.cn.ORCID http://orcid.org/0000-0002-4237-7418

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32060006
6 · The paper itself

Abstract

Altitude significantly affects both fruit length (FL) and seed germination timing (SGT) in plants. Alpine plants often require prolonged chilling to enhance seed germination rates, yet the molecular mechanisms underlying these adaptations remain largely unexplored. In this study, we have identified the gibberellin biosynthesis gene GA20ox3 as a key regulator of FL and SGT in Arabidopsis thaliana. Our findings demonstrate that DELLA proteins form a negative feedback loop by interacting with the transcription factor DNA-BINDING ONE ZINC FINGER6 (DOF6), which directly binds to the GA20ox3 promoter. Allelic variations in the GA20ox3 promoter of one alpine ecotype influence the binding affinity of DOF6, leading to variations in both FL and SGT. The geographical distribution of the GA20ox3 promoter alleles, corresponding well to different altitudes and temperatures, underscores the significant role of such variation in the A. thaliana's adaptation to the varied habitats, especially concerning seed germination timing. Our results reveal a cold-mediated gibberellin signaling mechanism that controls both FL and SGT, thereby optimizing reproductive success in varied environments.

Indexed as

Adaptation, PhysiologicalAltitudeArabidopsisArabidopsis ProteinsFruitGerminationSeedsAllelesGene Expression Regulation, PlantGenetic VariationGibberellinsPromoter Regions, GeneticTranscription FactorsArabidopsis ProteinsGibberellinsTranscription Factors

Identifiers

PMID40447597
PMCPMC12125310

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.