Evidence map›Paper›PMID 40446945›Full record

ArticleGastroenterology2025

Adeno-associated Virus-mediated Silencing of Sox4 Leads to Long-Term Amelioration of Liver Phenotypes in Mouse Models of Alagille Syndrome.

Duncan Fox, Jun Xie, Jennifer L Burwinkel, Josh M Adams, Kashish Chetal, Marzieh Keivandarian, Yaniv Faingelernt, Sanjay Subramanian, Mario F Lopez, Anna L Peters and 5 more

Abstract read
In one paragraph

Article in Gastroenterology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Duncan FoxDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas; Genetics and Genomics Graduate Program, Baylor College of Medicine, Houston, Texas.
Jun XieDepartment of Genetic and Cellular Medicine, UMass Chan Medical School, Worcester, Massachusetts; Horae Gene Therapy Center, UMass Chan Medical School, Worcester, Massachusetts; Department of Microbiology, UMass Chan Medical School, Worcester, Massachusetts; Viral Vector Core, UMass Chan Medical School, Worcester, Massachusetts.
Jennifer L BurwinkelDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Josh M AdamsProgram in Developmental Biology, Baylor College of Medicine, Houston, Texas.
Kashish ChetalDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Marzieh KeivandarianDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yaniv FaingelerntDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Sanjay SubramanianDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Mario F LopezDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Anna L PetersDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Nathan SalomonisDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Neda Zarrin-KhamehDepartment of Pathology and Immunology, Baylor College of Medicine and Ben Taub Hospital, Houston, Texas.
Guangping GaoDepartment of Genetic and Cellular Medicine, UMass Chan Medical School, Worcester, Massachusetts; Horae Gene Therapy Center, UMass Chan Medical School, Worcester, Massachusetts; Department of Microbiology, UMass Chan Medical School, Worcester, Massachusetts; Viral Vector Core, UMass Chan Medical School, Worcester, Massachusetts.
Stacey S HuppertDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Hamed Jafar-NejadDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas; Genetics and Genomics Graduate Program, Baylor College of Medicine, Houston, Texas; Program in Developmental Biology, Baylor College of Medicine, Houston, Texas. Electronic address: hamedj@bcm.edu.

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI LEE ARMISTEAD DENSON · 2007 to 2026
$24.4M
Preclinical and Clincial OutcomesP50HD103555 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI Sandesh Chakravarthy Sreenath Nagamani, David Loren Nelson · 2020 to 2026
$9.9M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, SAMACO, RODNEY C · 2014 to 2019
$7.8M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
Oligodendrocyte-focused rAAV gene therapy strategies for Canavan disease and LeukodystrophiesR01NS076991 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Guangping Gao · 2012 to 2026
$5.7M
Molecular regulation of hepatic cell differentiation and maturationR01DK120765 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI HUPPERT, STACEY S · 2019 to 2022
$1.6M
Targeting POGLUT1 to promote biliary development in Alagille syndromeR01DK132751 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI HUPPERT, STACEY S, JAFAR-NEJAD, HAMED · 2022 to 2024
$1.2M
NICHD NIH HHS P50 HD103555NICHD NIH HHS U54 HD083092NIDDK NIH HHS P30 DK078392NIDDK NIH HHS R01 DK120765NIDDK NIH HHS R01 DK132751NIGMS NIH HHS T32 GM008307NINDS NIH HHS R01 NS076991
6 · The paper itself

Abstract

BACKGROUND &

aimsIn patients with Alagille syndrome (ALGS), bile duct paucity often leads to severe cholestatic phenotypes for which liver transplantation remains the only definitive treatment. No Food and Drug Administration-approved mechanism-based strategies exist to enhance biliary development in ALGS or other diseases with bile duct paucity. We aimed to identify a therapeutic target to address this unmet need.

methodsPreclinical ALGS mouse models lacking 1 copy of Jag1 with or without conditional deletion of 1 or both copies of Sox9 were used. Sox4 levels were reduced genetically or with adeno-associated virus 8 (AAV8) vectors driving a Sox4-silencing sequence. Liver histology, biliary tree ink injection, serum chemistry, RNAscope (on mouse and human livers), mouse liver single-cell RNA-sequencing, and reanalysis of published human liver bulk RNA-sequencing were performed.

resultsConditional removal of 1 copy of Sox4 in mouse liver significantly improved the ALGS liver phenotypes in a Sox9-dependent manner. An increase in Sox4/SOX4 expression in early postnatal Jag1-heterozygous mouse livers and ALGS patient livers was observed. single-cell RNA-sequencing revealed the appearance of an intermediate hepatobiliary cluster co-expressing Sox4 and Sox9 in Jag1-heterozygous livers. AAV8-mediated Sox4 knockdown, ubiquitously or driven by the hepatocyte-specific thyroxine-binding globulin promoter, led to long-term improvement of ALGS liver phenotypes upon injection at postnatal day 1. AAV8 injection at postnatal day 15-after the appearance of liver necrosis-led to the incorporation of some transduced cells into bile ducts and phenotypic improvement.

conclusionsPreclinical studies provide proof of principle for postnatal AAV-mediated Sox4 knockdown in thyroxine-binding globulin

Indexed as

Alagille SyndromeDependovirusGenetic TherapyLiverSOXC Transcription FactorsAnimalsDisease Models, AnimalGene SilencingGenetic VectorsHumansJagged-1 ProteinMiceMice, KnockoutPhenotypeSOX9 Transcription FactorJAG1 protein, humanJag1 protein, mouseJagged-1 ProteinSOX4 protein, humanSox4 protein, mouseSox9 protein, mouseSOX9 Transcription FactorSOXC Transcription FactorsCholestasisGene TherapyJAG1Notch Signaling

Identifiers

PMID40446945
PMCPMC12354214

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.