Evidence map›Paper›PMID 40445949›Full record

ArticleThe Plant cell2025

Gene editing of the E3 ligase PIRE1 fine-tunes reactive oxygen species production for enhanced bacterial disease resistance in tomato.

Bardo Castro, Suji Baik, Megann Tran, Jie Zhu, Tianrun Li, Andrea Tang, Nathalie Aoun, Alison C Blundell, Michael Gomez, Elaine Zhang and 5 more

Abstract read
In one paragraph

Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Bardo CastroDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0009-0003-0878-4794
Suji BaikDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0009-0007-4657-6143
Megann TranDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0009-0004-4367-1637
Jie ZhuDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0002-5217-6249
Tianrun LiDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0002-8589-4634
Andrea TangDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0009-0002-1795-1964
Nathalie AounDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0002-9176-9805
Alison C BlundellDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0009-0002-5336-7642
Michael GomezDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-8623-4830
Elaine ZhangInnovative Genomics Institute, University of California, Berkeley, CA 94720, USA.ORCID 0009-0002-9578-8971
Myeong-Je ChoInnovative Genomics Institute, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-7638-7235
Tiffany Lowe-PowerDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0003-2681-3563
Shahid SiddiqueDepartment of Entomology and Nematology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0001-7503-4318
Brian StaskawiczDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-9711-3962
Gitta CoakerDepartment of Plant Pathology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0003-0899-2449

Funding

Immune Perception of Bacterial Pathogens in PlantsR35GM136402 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Gitta Laurel Coaker · 2020 to 2026
$3.0M
National Institutes of Health Grant NIH 1R35GM136402NIGMS NIH HHS R35 GM136402UC Davis Dean's Distinguished Graduate FellowshipUC President's Pre-Professoriate FellowshipUSDA NIFA 2023-67013-40245
6 · The paper itself

Abstract

Reactive oxygen species (ROS) accumulation is required for effective plant defense. Accumulation of the Arabidopsis (Arabidopsis thaliana) NADPH oxidase respiratory burst oxidase homolog D (RBOHD) is regulated by phosphorylation of a conserved C-terminal residue (T912) leading to ubiquitination by the RING E3 ligase Pbl13-interacting RING domain E3 ligase (PIRE). Arabidopsis PIRE knockouts exhibit enhanced ROS production and resistance to the foliar pathogen Pseudomonas syringae. Here, we identified 170 PIRE homologs, which emerged in tracheophytes and expanded in angiosperms. We investigated the role of tomato (Solanum lycopersicum) PIRE homologs in regulating ROS production, RBOH stability, and disease resistance. Mutational analyses of residues corresponding to T912 in the tomato RBOHD ortholog, SlRBOHB, affected protein accumulation and ROS production in a PIRE-dependent manner. Using genome editing, we generated mutants in 2 S. lycopersicum PIRE (SlPIRE) homologs. SlPIRE1 edited lines (Slpire1) in the tomato cultivar M82 displayed enhanced ROS production upon treatment with flg22, an immunogenic epitope of flagellin. Furthermore, Slpire1 exhibited decreased disease symptoms and bacterial accumulation when inoculated with foliar bacterial pathogens P. syringae and Xanthomonas campestris. However, Slpire1 exhibited similar levels of colonization as wild type upon inoculation with diverse soil-borne pathogens. These results indicate that PIRE regulates RBOHs in multiple plant species and is a promising target for foliar disease control. This study also highlights the pathogen-specific role of PIRE, indicating its potential for targeted manipulation to enhance foliar disease resistance without affecting root-associated pathogenic interactions.

Indexed as

Disease ResistanceGene EditingPlant DiseasesPlant ProteinsReactive Oxygen SpeciesSolanum lycopersicumUbiquitin-Protein LigasesArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantNADPH OxidasesPseudomonas syringaeArabidopsis ProteinsNADPH OxidasesPlant ProteinsReactive Oxygen SpeciesUbiquitin-Protein Ligases

Identifiers

PMID40445949
PMCPMC12124405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.