Evidence map›Paper›PMID 40445759›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Transcription-templated assembly of the nucleolus in the

Nishant Kodan, Rabeya Hussaini, Stephanie C Weber, Jane Kondev, Lishibanya Mohapatra

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Nishant KodanSchool of Physics and Astronomy, College of Science, Rochester Institute of Technology, Rochester, NY 14623.
Rabeya HussainiDepartment of Physics, New York University, New York, NY 10003.ORCID 0009-0008-4069-0196
Stephanie C WeberDepartment of Biology, McGill University, Montreal, QC H3A 1B1, Canada.ORCID 0000-0002-7297-2875
Jane KondevDepartment of Physics, Brandeis University, Waltham, MA 02454.ORCID 0000-0001-7522-7144
Lishibanya MohapatraSchool of Physics and Astronomy, College of Science, Rochester Institute of Technology, Rochester, NY 14623.ORCID 0000-0003-4332-1675

Funding

Design Principles of Size-Control of Organelles Growing in a Shared Pool of their Building BlocksR35GM147556 · NIGMS · ROCHESTER INSTITUTE OF TECHNOLOGY · PI Lishibanya Mohapatra · 2022 to 2026
$1.8M
Canadian Government | Canadian Institutes of Health Research (CIHR) PJT159580HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM147556NIGMS NIH HHS R35 GM147556NSF (NSF) DMR-1610737NSF (NSF) DMR-2011846
6 · The paper itself

Abstract

The nucleolus is a multicomponent structure made of RNA and proteins that serves as the site of ribosome biogenesis within the nucleus. It has been extensively studied as a prototype of a biomolecular condensate whose assembly is driven by phase separation. While the steady-state size of the nucleolus is quantitatively accounted for by the thermodynamics of phase separation, we show that experimental measurements of the assembly dynamics are inconsistent with a simple model of a phase-separating system relaxing to its equilibrium state. Instead, we show that the dynamics are well described by a model in which the transcription of ribosomal RNA actively drives nucleolar assembly. We find that our model of active transcription-templated assembly quantitatively accounts for the rapid kinetics observed in early embryos at different developmental stages, and for different RNA interference (RNAi) perturbations of embryo size. Our model predicts a scaling of the time to assembly with the volume of the nucleus to the one-third power, which is confirmed by experimental data. Our study highlights the role of active processes such as transcription in controlling the placement and timing of assembly of membraneless organelles.

Indexed as

Caenorhabditis elegansCell NucleolusEmbryo, NonmammalianTranscription, GeneticAnimalsModels, BiologicalRNA InterferenceRNA, RibosomalRNA, Ribosomalmembraneless organellesnucleolar assemblytranscription-templated assembly

Identifiers

PMID40445759
PMCPMC12146744

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.