Evidence map›Paper›PMID 40444660›Full record

ArticleThe New phytologist2025

In silico analysis of the evolution of root phenotypes during maize domestication in Neolithic soils of Tehuacán.

Ivan Lopez-Valdivia, Miguel Vallebueno-Estrada, Harini Rangarajan, Kelly Swarts, Bruce F Benz, Michael Blake, Jagdeep Singh Sidhu, Sergio Perez-Limon, Ruairidh J H Sawers, Hannah Schneider and 1 more

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ivan Lopez-ValdiviaDepartment of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA.ORCID https://orcid.org/0000-0003-1955-4989
Miguel Vallebueno-EstradaGregor Mendel Institute of Molecular Plant Biology GmbH: Vienna, Wien, 1030, Austria.ORCID https://orcid.org/0000-0001-8647-8758
Harini RangarajanDepartment of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA.ORCID https://orcid.org/0000-0002-4575-9251
Kelly SwartsGregor Mendel Institute of Molecular Plant Biology GmbH: Vienna, Wien, 1030, Austria.ORCID https://orcid.org/0000-0002-0578-7426
Bruce F BenzBiology Department, Texas Wesleyan University, Fort Worth, TX, 76105, USA.ORCID https://orcid.org/0000-0003-0181-6899
Michael BlakeDepartment of Anthropology, The University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.ORCID https://orcid.org/0000-0001-6292-0927
Jagdeep Singh SidhuDepartment of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA.ORCID https://orcid.org/0000-0002-4672-3701
Sergio Perez-LimonDepartment of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA.ORCID https://orcid.org/0000-0002-1893-4325
Ruairidh J H SawersDepartment of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA.ORCID https://orcid.org/0000-0002-8945-3078
Hannah SchneiderDepartment of Physiology and Cell Biology, Leibniz Institute for Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, 06466, Seeland, Germany.ORCID https://orcid.org/0000-0003-4655-6250
Jonathan P LynchDepartment of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA.ORCID https://orcid.org/0000-0002-7265-9790

Funding

European Union's Framework Programme for Research and Innovation Horizon 2020 847548Foundation for Food and Agriculture Research 602757National Science Foundation 0091490Social Sciences and Humanities Research Council of CanadaUnited States Department of Agriculture-National Institiute of Food and Agriculture PEN04732
6 · The paper itself

Abstract

Roots are essential for plant adaptation to changing environments, yet the role of roots in crop domestication remains unclear. This study examined the evolution of root phenotypes from teosinte to maize, a transition resulting in reduced nodal root number (NRN), multiseriate cortical sclerenchyma (MCS), and increased seminal root number (SRN). We reconstructed the root phenotypes of maize and teosinte, as well as the environments of the Tehuacán Valley over the last 18 000 yr using a combination of ancient DNA, paleobotany, and functional-structural modeling. Our models reveal that increasing Holocene atmospheric CO

Indexed as

Biological EvolutionComputer SimulationDomesticationPlant RootsSoilZea maysPhenotypeSoilancient maizemultiseriate cortical sclerenchymanodal root numberroot domesticationroot evolutionseminal root numberTehuacánteosinte

Identifiers

PMID40444660
PMCPMC12409111

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.