Evidence map›Paper›PMID 40443058›Full record

ArticleThe Journal of heredity2025

Two genomes of the white perch (Morone americana), an ecologically important teleost.

Josephine R Paris, Megan A Criss, Jessica L Walsh, Joan Ferrer Obiol, Christopher S Murray, Jason Q Boone, Ann M Petersen

Abstract read
In one paragraph

Article in The Journal of heredity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Josephine R ParisIndustrial Economics, Incorporated (IEc), Cambridge, MA, United States.ORCID 0000-0001-6868-3416
Megan A CrissFloragenex, Inc., Beaverton, OR, United States.ORCID 0009-0009-1241-2647
Jessica L WalshFloragenex, Inc., Beaverton, OR, United States.ORCID 0000-0003-3926-6503
Joan Ferrer ObiolDepartment of Biology, Colorado State University, Fort Collins, CO, United States.ORCID 0000-0002-1184-5434
Christopher S MurrayBiology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, United States.ORCID 0000-0001-8504-9054
Jason Q BooneFloragenex, Inc., Beaverton, OR, United States.ORCID 0000-0002-1961-0162
Ann M PetersenIndustrial Economics, Incorporated (IEc), Cambridge, MA, United States.ORCID 0000-0002-2687-721X

Funding

National Oceanic and Atmospheric Administration
6 · The paper itself

Abstract

The white perch, Morone americana, is a widely distributed and ecologically important teleost native to the east coast of North America. Due to its ease of capture and high abundance across a range of ecological conditions, the white perch has been used - and continues to be developed - as a bioindicator of contaminant exposure. Outside of its native range, the white perch is invasive, negatively impacting local ecology and hybridizing with congeneric species. Using PacBio HiFi data, we present two (female and male) highly contiguous genome assemblies. The female assembly spans 694 Mb (264 contigs, N50: 24.9 Mb), with 85% of the total assembly size captured in the largest 24 contigs (the karyotype for the species is 2n = 48). The male assembly spans 688 Mb (265 contigs, N50: 26.4 Mb), with 89% of the total assembly size captured in the largest 24 contigs. Both assemblies have high BUSCO completeness scores of 98.7% (female) and 98.8% (male), and a high k-mer completeness (>98% for both genomes). Combining evidence derived from transcriptomic data and a large protein database, we constructed a high-quality annotation for the female assembly (99% BUSCO completeness, 87% OMArk completeness), including 20,699 predicted protein-coding genes, of which 20,406 have a functional annotation and 16,187 have an associated gene name. These reference genomes will support the development of the white perch as a bioindicator and will serve as an important resource for studying the species' invasiveness and monitoring intraspecific hybridization using genomic tools.

Indexed as

GenomePerchesAnimalsFemaleGenomicsMaleaquaticbioindicatorhybridizationinvasiveMoronidaereference genome

Identifiers

PMID40443058
PMCPMC12584590

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.