Evidence map›Paper›PMID 40442502›Full record

ArticleNature microbiology2025

Structural insights into light harvesting by antenna-containing rhodopsins in marine Asgard archaea.

Gali Tzlil, María Del Carmen Marín, Yuma Matsuzaki, Probal Nag, Shota Itakura, Yosuke Mizuno, Shunya Murakoshi, Tatsuki Tanaka, Shirley Larom, Masae Konno and 15 more

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Protonation-Enhanced Energy Transfer in Xanthorhodopsin Kin4B8.The journal of physical chemistry letters · 2025
    Article
  6. Opsins are Phospholipid Scramblases in All Domains of Life.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Gali Tzlil *Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
María Del Carmen Marín *Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.ORCID http://orcid.org/0000-0001-6603-1692
Yuma Matsuzaki *Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Probal Nag *Fritz Haber Center for Molecular Dynamics Research Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.
Shota ItakuraDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.
Yosuke MizunoDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.ORCID http://orcid.org/0000-0002-4874-0679
Shunya MurakoshiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Tatsuki TanakaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Shirley LaromFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
Masae KonnoThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Japan.ORCID http://orcid.org/0000-0002-0605-1816
Rei Abe-YoshizumiDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.
Ana Molina-MárquezLaboratory of Biochemistry and Molecular Biology, Faculty of Experimental Sciences, Marine International Campus of Excellence (CEIMAR), University of Huelva, Huelva, Spain.
Daniela Bárcenas-PérezCentre Algatech, Institute of Microbiology, Czech Academy of Sciences, Třeboň, Czech Republic.ORCID http://orcid.org/0000-0003-3552-1394
José CheelCentre Algatech, Institute of Microbiology, Czech Academy of Sciences, Třeboň, Czech Republic.
Michal KoblížekCentre Algatech, Institute of Microbiology, Czech Academy of Sciences, Třeboň, Czech Republic.ORCID http://orcid.org/0000-0001-6938-2340
Rosa LeónLaboratory of Biochemistry and Molecular Biology, Faculty of Experimental Sciences, Marine International Campus of Excellence (CEIMAR), University of Huelva, Huelva, Spain.
Kota KatayamaDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.ORCID http://orcid.org/0000-0001-8498-4374
Hideki KandoriDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Japan.ORCID http://orcid.org/0000-0002-4922-1344
Igor SchapiroFritz Haber Center for Molecular Dynamics Research Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID http://orcid.org/0000-0001-8536-6869
Wataru ShihoyaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. wtrshh9@gmail.com.ORCID http://orcid.org/0000-0003-4813-5740
Osamu NurekiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. nureki@bs.s.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0003-1813-7008
Keiichi InoueThe Institute for Solid State Physics, The University of Tokyo, Kashiwa, Japan. inoue@issp.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-6898-4347
Andrey RozenbergFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel. alephreish@gmail.com.ORCID http://orcid.org/0000-0001-9534-2297
Ariel ChazanFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel. achazan@ethz.ch.ORCID http://orcid.org/0000-0002-2768-5818
Oded BéjàFaculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel. beja@technion.ac.il.ORCID http://orcid.org/0000-0001-6629-0192

Funding

Israel Science Foundation (ISF) 3131/20MEXT | Japan Society for the Promotion of Science (JSPS) JPMXP1323015482
6 · The paper itself

Abstract

Aquatic bacterial rhodopsin proton pumps harvest light energy for photoheterotrophic growth and are known to contain hydroxylated carotenoids that expand the wavelengths of light utilized, but these have not been characterized in marine archaea. Here, by combining a marine chromophore extract with purified archaeal rhodopsins identified in marine metagenomes, we show light energy transfer from diverse hydroxylated carotenoids to heimdallarchaeial rhodopsins (HeimdallRs) from uncultured marine planktonic members of 'Candidatus Kariarchaeaceae' ('Candidatus Asgardarchaeota'). These light-harvesting antennas absorb in the blue-light range and transfer energy to the green-light-absorbing retinal chromophore within HeimdallRs, enabling the use of light that is otherwise unavailable to the rhodopsin. Furthermore, we show elevated proton pumping by the antennas in HeimdallRs under white-light illumination, which better simulates the light conditions encountered by these archaea in their natural habitats. Our results indicate that light-harvesting antennas in microbial rhodopsins exist in families beyond xanthorhodopsins and proteorhodopsins and are present in both marine bacteria and archaea.

Indexed as

ArchaeaArchaeal ProteinsLight-Harvesting Protein ComplexesRhodopsinRhodopsins, MicrobialAquatic OrganismsCarotenoidsEnergy TransferLightMetagenomePhylogenySeawaterArchaeal ProteinsCarotenoidsLight-Harvesting Protein ComplexesRhodopsinRhodopsins, Microbial

Identifiers

PMID40442502
PMCPMC12137139

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.