Evidence map›Paper›PMID 40442454›Full record

ArticleThe plant genome2025

Genome-wide association study reveals significant loci and candidate genes for fruit branch length in upland cotton.

Hui Chang, Honghu Ji, Ruijie Liu, Juling Feng, Jiayi Wang, Shuqi Zhao, Wei Li, Zehua Qiu, Nabil Ibrahim Elsheery, Shuxun Yu and 2 more

Abstract read
In one paragraph

Article in The plant genome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. The Gibberellin 2-Oxidase GeneInternational journal of molecular sciences · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Hui ChangCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.
Honghu JiJinhua Academy of Agricultural Sciences, Jinhua Key Laboratory of Innovative Utilization of Special Grain Crops Resources in Central Zhejiang Province, Jinhua, China.
Ruijie LiuCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.
Juling FengCollege of Agronomy, Northwest A & F University, Yangling, China.
Jiayi WangCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.
Shuqi ZhaoCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.
Wei LiHuanggang Academy of Agricultural Sciences, Huanggang, China.
Zehua QiuCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.
Nabil Ibrahim ElsheeryAgricultural Botany Department, Faculty of Agriculture, Tanta University, Tanta, Egypt.
Shuxun YuCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.
Libei LiCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.ORCID https://orcid.org/0000-0003-1138-134X
Zhen FengCollege of Advanced Agriculture Sciences, Zhejiang A & F University, Hangzhou, China.

Funding

National Natural Science Foundation of China 32401297
6 · The paper itself

Abstract

The length of fruit branches significantly influences plant architecture in upland cotton (Gossypium hirsutum L.), which is crucial for optimizing fiber yield and quality. In this study, a comprehensive genome-wide association study was conducted based on whole-genome resequencing data that identified 249 significant SNPs associated with fruit branch length (FBL), forming 79 distinct quantitative trait loci (QTL) regions. Notably, stable QTL regions qFBL-A10-4 and qFBL-D03-17 were identified, harboring key candidate genes such as Ghir_A10G014390 and Ghir_D03G011390. Superior haplotypes of these genes significantly enhance FBL, fiber yield, and quality, offering valuable targets for cotton breeding programs focused on optimizing plant architecture and productivity.

Indexed as

FruitGenes, PlantGossypiumQuantitative Trait LociGenome, PlantGenome-Wide Association StudyHaplotypesPolymorphism, Single Nucleotide

Identifiers

PMID40442454
PMCPMC12122414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.