Evidence map›Paper›PMID 40442319›Full record

ArticleCommunications biology2025

Effect of pH on the cyanobacterial circadian oscillator in vitro.

Kumiko Ito-Miwa, Yasuhiro Onoue, Takao Kondo, Kazuki Terauchi

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Intrinsic period stability of the cyanobacterial circadian oscillator across in vitro and in vivo conditions.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kumiko Ito-MiwaGraduate School of Science and Institute for Advanced Research, Nagoya University, Nagoya, Japan. ito.kumiko.u7@f.mail.nagoya-u.ac.jp.ORCID http://orcid.org/0000-0002-3579-1311
Yasuhiro OnoueCollege of Life Sciences, Ritsumeikan University, Shiga, Japan.ORCID http://orcid.org/0000-0002-3152-0047
Takao KondoGraduate School of Science and Institute for Advanced Research, Nagoya University, Nagoya, Japan.
Kazuki TerauchiCollege of Life Sciences, Ritsumeikan University, Shiga, Japan. terauchi@fc.ritsumei.ac.jp.ORCID http://orcid.org/0000-0002-0320-0636

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 17H01427MEXT | Japan Society for the Promotion of Science (JSPS) 17K19247, 19K05833, 24H02301 and 24K01686
6 · The paper itself

Abstract

The cyanobacterial clock protein KaiC exhibits robust 24-h oscillation of phosphorylation when incubated with KaiA, KaiB, and ATP in vitro. This study shows that the period of the in vitro phosphorylation rhythm of KaiC was correlated with solution pH, varying from 15 h at pH 6.5-36 h at pH 8.5, without affecting the period's temperature compensation. The solution pH altered the autophosphorylation and autodephosphorylation of KaiC and the effect of KaiB on KaiC but had little effect on its ATPase activity. It also modified the surface charge of the interface between two ATPase domains in KaiC, thereby affecting the autophosphorylation and autodephosphorylation activity of this protein via interdomain communication. These findings not only reveal key biochemical properties of the Kai oscillator but also provide insight into its evolutionary adaptation to environmental changes in cyanobacteria.

Indexed as

Bacterial ProteinsCircadian ClocksCircadian RhythmCircadian Rhythm Signaling Peptides and ProteinsCyanobacteriaHydrogen-Ion ConcentrationPhosphorylationBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiC protein, cyanobacteria

Identifiers

PMID40442319
PMCPMC12122815

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.