Evidence map›Paper›PMID 40442284›Full record

ArticleNature genetics2025

Analysis of R-loop forming regions identifies RNU2-2 and RNU5B-1 as neurodevelopmental disorder genes.

Adam Jackson, Nishi Thaker, Alexander Blakes, Gillian Rice, Sam Griffiths-Jones, Meena Balasubramanian, Jennifer Campbell, Nora Shannon, Jungmin Choi, Juhyeon Hong and 13 more

Erratum issuedAbstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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  20. Further evidence ofJournal of medical genetics · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Adam JacksonDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK. adam.jackson@manchester.ac.uk.ORCID http://orcid.org/0000-0002-3674-3960
Nishi ThakerDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0009-0006-7025-8842
Alexander BlakesDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-0260-7020
Gillian RiceDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0002-4223-0571
Sam Griffiths-JonesDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-6043-807X
Meena BalasubramanianDivision of Clinical Medicine, School of Medicine and Population Health, University of Sheffield, Sheffield, UK.
Jennifer CampbellLeeds Clinical Genomics Service, Leeds Teaching Hospitals NHS Trust, Leeds, UK.
Nora ShannonNottingham Regional Genetics Service, Nottingham City Hospital Campus, The Gables, Nottingham, UK.
Jungmin ChoiDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul, Republic of Korea.
Juhyeon HongDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul, Republic of Korea.
David HuntWessex Clinical Genetics Service, Princess Anne Hospital, University Hospital Southampton NHS Trust, Southampton, UK.
Anna de BurcaWessex Clinical Genetics Service, Princess Anne Hospital, University Hospital Southampton NHS Trust, Southampton, UK.
Soo Yeon KimDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Taekeun KimDepartment of Biomedical Sciences, Korea University College of Medicine, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0001-5303-0444
Seungbok LeeDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Melody RedmanLeeds Clinical Genomics Service, Leeds Teaching Hospitals NHS Trust, Leeds, UK.
Rocio RiusCentre for Population Genomics, Garvan Institute of Medical Research and UNSW Sydney, Sydney, New South Wales, Australia.
Cas SimonsCentre for Population Genomics, Garvan Institute of Medical Research and UNSW Sydney, Sydney, New South Wales, Australia.
Tiong Yang TanVictorian Clinical Genetics Services, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0001-8455-7778
Jamie EllingfordDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0003-1137-9768
Raymond T O'KeefeDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.ORCID http://orcid.org/0000-0001-8764-1289
Jong Hee ChaeDepartment of Genomic Medicine, Seoul National University Hospital, Seoul, Republic of Korea.
Siddharth BankaDivision of Evolution, Infection and Genomics, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK. siddharth.banka@manchester.ac.uk.ORCID http://orcid.org/0000-0002-8527-2210

Funding

Department of Health | National Health and Medical Research Council (NHMRC) 2009982DH | National Institute for Health Research (NIHR) NIHR203308EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 779257RCUK | Medical Research Council (MRC) MR/Y008170/1Wellcome TrustWellcome Trust (Wellcome) 223521/Z/21/Z
6 · The paper itself

Abstract

R-loops are DNA-RNA hybrid structures that may promote mutagenesis. However, their contribution to human Mendelian disorders is unexplored. Here we show excess de novo variants in genomic regions that form R-loops (henceforth, 'R-loop regions') and demonstrate enrichment of R-loop region variants (RRVs) in ribozyme, snoRNA and snRNA genes, specifically in rare disease cohorts. Using this insight, we report neurodevelopmental disorders (NDDs) caused by rare variants in two major spliceosomal RNA encoding genes, RNU2-2 and RNU5B-1. These, along with the recently described RNU4-2-related ReNU syndrome, provide a genetic explanation for a substantial proportion of individuals with NDDs.

Indexed as

Neurodevelopmental DisordersRibonucleoprotein, U5 Small NuclearRNA, Small NuclearHumansMutationNucleic Acid ConformationRNA, Small NucleolarRibonucleoprotein, U5 Small NuclearRNA, Small NuclearRNA, Small Nucleolar

Identifiers

PMID40442284
PMCPMC12165836

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.