Evidence map›Paper›PMID 40442115›Full record

ArticleNature communications2025

The YoaA-χ helicase modulates the dynamics of single-stranded DNA binding protein on DNA.

Savannah J Weeks-Pollenz, Matthew J Petrides, Kaylie A Padgett-Pagliai, Robert Davis, Kathryn K Harris, Linda B Bloom

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. A superfamily 1 helicase translocates on double-stranded DNA.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. A NovelbioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Savannah J Weeks-PollenzDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-0676-5683
Matthew J PetridesDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0003-0229-0075
Kaylie A Padgett-PagliaiDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-2616-9969
Robert DavisDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.
Kathryn K HarrisDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0009-0008-7751-1286
Linda B BloomDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA. lbloom@ufl.edu.ORCID http://orcid.org/0000-0002-6075-4387

Funding

Mechanisms and Functions of Iron-Sulfur Helicases in DNA repairR01GM140166 · NIGMS · UNIVERSITY OF FLORIDA · PI BLOOM, LINDA B · 2021 to 2024
$1.4M
How SSB Regulates YoaA-chi's Function in DNA Damage RepairF31ES034652 · NIEHS · UNIVERSITY OF FLORIDA · PI POLLENZ, SAVANNAH WEEKS · 2022 to 2024
$103k
National Science Foundation (NSF) MCB 1817869NIEHS NIH HHS F31 ES034652NIGMS NIH HHS R01 GM140166U.S. Department of Health & Human Services | National Institutes of Health (NIH) ES034652U.S. Department of Health & Human Services | National Institutes of Health (NIH) F31ES03465U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM140166
6 · The paper itself

Abstract

The Escherichia coli helicase, YoaA, and DNA polymerase III subunit, χ, form a complex (YoaA-χ) that promotes tolerance to the DNA chain-terminator 3'-azidothymidine (AZT). Single-stranded DNA binding protein (SSB), which accumulates at stalled replication forks, also contributes to AZT tolerance through interactions with χ. Here we show that in vitro, χ mediates interactions between YoaA and SSB that modulate helicase activity in a substrate-specific manner with little effect on overhang DNA but inhibiting unwinding of forked DNA. SSB similarly affects the activity of the YoaA paralog, DinG. Single-molecule experiments show that SSB translocates with YoaA-χ, increasing both the lifetime and frequency of SSB binding events. Mutational analyses show that χ binds at the back of YoaA relative to the direction of translocation supporting a model in which YoaA-χ pulls SSB along DNA as it translocates. To our knowledge, this is the first demonstration of a mechanoenzyme pulling SSB along ssDNA.

Indexed as

DNA-Binding ProteinsDNA HelicasesDNA Polymerase IIIDNA, Single-StrandedEscherichia coliEscherichia coli ProteinsDNA, BacterialDNA ReplicationProtein BindingDNA, BacterialDNA-Binding ProteinsDNA HelicasesDNA Polymerase IIIDNA, Single-StrandedEscherichia coli ProteinsSSB protein, E coli

Identifiers

PMID40442115
PMCPMC12122834

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.