Evidence map›Paper›PMID 40439743›Full record

ArticleArchives of virology2025

Genomic analysis of the novel Stenotrophomonas phage vB_Srh_LBjhp91a, isolated from a Karst cave in China.

Lou Ren, Zheng Fang, Shixia Li, Qingshan Wu, Lan Xiang, Chuangen Lin, Qiuping Liu, Leitao Tan, Qingbei Weng

Abstract read
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In one paragraph

Article in Archives of virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lou Ren *School of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Zheng Fang *School of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Shixia LiSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Qingshan WuSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Lan XiangQiannan Normal University for Nationalities, Duyun, 558000, PR China.
Chuangen LinSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Qiuping LiuSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Leitao TanSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China.
Qingbei WengSchool of Life Sciences, Guizhou Normal University, Guiyang, 550025, PR China. wengqb@126.com.ORCID http://orcid.org/0000-0003-4244-573X

Funding

Joint Fund of the National Natural Science Foundation of China and the Karst Science Research Center of Guizhou Province U1812401Platform and Talent Development of the Department of Science and Technology of Guizhou [2019] 5655Provincial Program on Platform the Department of Science and Technology of Guizhou [2019] 5617
6 · The paper itself

Abstract

Stenotrophomonas phage vB_Srh_LBjhp91a was isolated from a karst cave, and its genome was sequenced. This phage has a 63,966-bp circular dsDNA genome (60.7% G + C content) containing 83 predicted open reading frames and two tRNAs. A BLASTn search revealed 80.95% nucleotide sequence identity to Stenotrophomonas phage vB_Sm_QDWS359 (genus Xooduovirus, family Mesyanzhinovviridae). Phylogenetic analysis based on the DNA polymerase and terminase large subunit genes grouped vB_Srh_LBjhp91a with members of the genera Bosavirus, Elanorvirus, and Xooduovirus. Proteomic phylogenetic analysis further clustered it with phage vB_Sm_QDWS359. Sequence comparisons revealed 71.7% average nucleotide identity between phage vB_Srh_LBjhp91a and phage vB_Sm_QDWS359. These findings indicate that phage vB_Srh_LBjhp91a should be considered a member of a new species within the genus Xooduovirus.

Indexed as

BacteriophagesCavesGenome, ViralStenotrophomonasBase CompositionChinaDNA, ViralGenomicsOpen Reading FramesPhylogenySequence Analysis, DNADNA, Viral

Identifiers

PMID40439743

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.