Evidence map›Paper›PMID 40439731›Full record

ArticleArchives of microbiology2025

Characterization of the NRPS operon homolog for surfactin A and surfactin C synthesis in Bacillus spp.

Kojiro Ito, Mana Adachi, Minenosuke Matsutani, Ryota Kataoka, Gen Enomoto, Akinobu Kajikawa, Kenji Yokota

Abstract read
In one paragraph

Article in Archives of microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Immunomodulatory Properties of the Cyclic Lipopeptide Surfactin.Journal of microbiology and biotechnology · 2026
    Review
  2. Surfactin-ProducingFoods (Basel, Switzerland) · 2026
    Article
  3. A novel bacterial symbiont in the seaweedFrontiers in microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kojiro ItoDepartment of Agricultural Chemistry, Tokyo University of Agriculture, Tokyo, Japan.
Mana AdachiDepartment of Agricultural Chemistry, Tokyo University of Agriculture, Tokyo, Japan.
Minenosuke MatsutaniNODAI Genome Research Center, Tokyo University of Agriculture, Tokyo, Japan.
Ryota KataokaFaculty of Life and Environmental Sciences, University of Yamanashi, Yamanashi, Japan.
Gen EnomotoDepartment of Agricultural Chemistry, Tokyo University of Agriculture, Tokyo, Japan.
Akinobu KajikawaDepartment of Agricultural Chemistry, Tokyo University of Agriculture, Tokyo, Japan.
Kenji YokotaDepartment of Agricultural Chemistry, Tokyo University of Agriculture, Tokyo, Japan. yokota@nodai.ac.jp.

Funding

Japan Science and Technology Corporation JPMJSP2122
6 · The paper itself

Abstract

Surfactin is a cyclic lipopeptide produced by Bacillus spp., consisting of a β-hydroxy fatty acid and a heptapeptide synthesized by non-ribosomal peptide synthetases. Surfactin congeners (A, B, and C) differ in amino acid substitutions, with Leu7 in surfactin A replaced by Val in B and Ile in C. Our LC-MS analysis revealed that the elution profiles of surfactin-producing strains could be classified into two distinct patterns under identical culture conditions, corresponding to surfactin A and C production. This suggests that endogenous factors influence surfactin production. Therefore, we aimed to identify the genetic factor that regulates surfactin congener production. The srfA operon for surfactin A biosynthesis in B. subtilis, composed of four open reading frames (ORFs), is srfAABCD. Comparative genomic analysis between the B. subtilis JCM 1465 srfA operon and the TUA12 surfactin biosynthesis genes examined in this study revealed that the operon responsible for surfactin A biosynthesis is distinct, exhibiting 68.7%, 69.2%, 84.7%, and 67.4% homology with the four ORFs, respectively. Similarly, the operon for Ptrs2 surfactin C biosynthesis showed 68.7%, 69.2%, 64.4%, and 67.1% homology. These differences indicate that the identified surfactin A and C biosynthetic operons are novel genetic variants. Further analysis identified the adenylation domain responsible for selecting Ile7 in surfactin C via domain substitution in a surfactin A-producing strain. Average nucleotide identity analysis showed that the surfactin A and C operons were found in B. velezensis and B. amyloliquefaciens, respectively. Our findings suggest that surfactin congener production is species-dependent, with the srf operon specifically distributed in Bacillus spp.

Indexed as

BacillusBacterial ProteinsLipopeptidesOperonPeptides, CyclicPeptide SynthasesBacillus subtilisOpen Reading FramesBacterial ProteinsLipopeptidesnon-ribosomal peptide synthasePeptides, CyclicPeptide Synthasessurfactin peptideBacillusCyclic lipopeptideNon-ribosomal peptide synthesisSurfactin

Identifiers

PMID40439731
PMCPMC12122625

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.