Evidence map›Paper›PMID 40439308›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2025

Genome-wide association mapping for salinity recovery of rice seedlings grown in hydroponic and field conditions.

Md Abubakar Siddique, Marjorie De Ocampo, Efren Bagunu, William Paul Quick, Maria Genaleen Diaz, Amelia Henry

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Genome-wide association mapping for salinity recovery of rice seedlings grown in hydroponic and field conditions.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  2. Crops under stress: can we mitigate the impacts of climate change on agriculture and launch the 'Resilience Revolution'?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Md Abubakar SiddiqueRice Breeding Innovations Department, International Rice Research Institute, Los Baños, Laguna 4031, Philippines.ORCID 0000-0001-6355-0868
Marjorie De OcampoRice Breeding Innovations Department, International Rice Research Institute, Los Baños, Laguna 4031, Philippines.ORCID 0009-0006-9621-3714
Efren BagunuRice Breeding Innovations Department, International Rice Research Institute, Los Baños, Laguna 4031, Philippines.
William Paul QuickRice Breeding Innovations Department, International Rice Research Institute, Los Baños, Laguna 4031, Philippines.
Maria Genaleen DiazInstitute of Biological Sciences, University of the Philippines Los Baños, Los Baños, Philippines.ORCID 0000-0002-6919-059X
Amelia HenryRice Breeding Innovations Department, International Rice Research Institute, Los Baños, Laguna 4031, Philippines.ORCID 0000-0001-6255-5480

Funding

Bangladesh Agricultural Research Council
6 · The paper itself

Abstract

Salinity stress significantly impacts global food production by hindering crop growth and reducing cultivable land. Efforts to develop salinity-tolerant rice varieties have faced challenges due to the complexity of salinity tolerance traits and a lack of suitable genetic donors. One complexity of salinity stress is that fluctuating degrees of severity often occur over a rice growing season, which may require plants to recover quickly as salinity levels temporarily decrease. This study evaluated salinity recovery in 256 diverse rice accessions, including 230 from the 3K Rice Genomes Project. Key physiological traits were measured, indicating accessions that outperformed the salinity-tolerant variety FL478, three of which were common in both the field and in hydroponics: BRRI dhan 47, Kalar Kar and WAS 170-B-B-1-1. Genome-wide association mapping identified significant single nucleotide polymorphisms linked to salinity tolerance and recovery-related traits, with four genes (

Indexed as

OryzaSalt ToleranceSeedlingsChromosome MappingGenome, PlantGenome-Wide Association StudyHydroponicsPolymorphism, Single NucleotideSalinitygenome-wide association mappingrelative growth ratericesalinity recoveryseedling stage

Identifiers

PMID40439308
PMCPMC12121376

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.