Evidence map›Paper›PMID 40437512›Full record

ArticleAntimicrobial resistance and infection control2025

Risk factors for household colonization by extended-spectrum cephalosporin-resistant enterobacterales (ESCrE) in Botswana.

Sukaina Shivji, Naledi Mannathoko, Mosepele Mosepele, Robert Gross, Leigh Cressman, Anne Jaskowiak-Barr, Warren B Bilker, Kevin Alby, Laurel Glaser, Melissa Richard-Greenblatt and 8 more

Abstract read
In one paragraph

Article in Antimicrobial resistance and infection control, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Sukaina ShivjiDivision of Infectious Diseases, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 712 Blockley Hall 423 Guardian Drive, Philadelphia, PA, 19104-6073, USA.
Naledi MannathokoDepartment of Biomedical Sciences, University of Botswana, Gaborone, Botswana.
Mosepele MosepeleDepartment of Internal Medicine, University of Botswana, Gaborone, Botswana.
Robert GrossDivision of Infectious Diseases, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 712 Blockley Hall 423 Guardian Drive, Philadelphia, PA, 19104-6073, USA. grossr@pennmedicine.upenn.edu.
Leigh CressmanCenter for Clinical Epidemiology and Biostatistics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Anne Jaskowiak-BarrCenter for Clinical Epidemiology and Biostatistics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Warren B BilkerDepartment of Biostatistics, Epidemiology, and Informatics, Perelman School of Medicine, University of Pennsylvania, 804 Blockley Hall 423 Guardian Drive, Philadelphia, PA, 19104-6073, USA.
Kevin AlbyDepartment of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, USA.
Laurel GlaserDepartment of Pathology and Laboratory Medicine, University Pennsylvania, Philadelphia, PA, USA.
Melissa Richard-GreenblattPublic Health Ontario, Toronto, ON, Canada.
Laura CowdenCenter for Clinical Epidemiology and Biostatistics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Alexa PatelCenter for Clinical Epidemiology and Biostatistics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Kgotlaetsile SewawaBotswana-University of Pennsylvania Partnership (BUP), Gaborone, Botswana.
Dimpho OtukileBotswana-University of Pennsylvania Partnership (BUP), Gaborone, Botswana.
Giacomo Maria PaganottiDivision of Infectious Diseases, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 712 Blockley Hall 423 Guardian Drive, Philadelphia, PA, 19104-6073, USA.
Margaret MokomaneSchool of Allied Health Professions, University of Botswana, Gaborone, Botswana.
Evan SnitkinUniversity of Michigan School of Medicine, Ann Arbor, MI, USA.
Ebbing LautenbachDivision of Infectious Diseases, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 712 Blockley Hall 423 Guardian Drive, Philadelphia, PA, 19104-6073, USA. ebbing@pennmedicine.upenn.edu.

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ronald G Collman · 1999 to 2026
$78.6M
NIAID NIH HHS P30 AI045008
6 · The paper itself

Abstract

backgroundThe epidemiology of community colonization with extended-spectrum cephalosporin-resistant Enterobacterales (ESCrE) in low- and middle-income countries (LMICs) is largely uncharacterized. In the community, the household is of particular importance. Identifying risk factors for household ESCrE colonization is critical to inform antibiotic resistance reduction strategies.

methodsParticipants were enrolled at 6 clinics in Botswana. All participants had rectal swabs collected for selective plating and confirmation of ESCrE. Data were collected on demographics, comorbidities, antibiotic use, healthcare exposures, travel, and farm/animal contact. Households were considered exposed if any member had the exposure of interest. Households with ESCrE colonization (cases) were compared to non-colonized households (controls) to identify risk factors for household ESCrE colonization.

resultsFrom 1/1/20 - 9/4/20, 327 households were enrolled. The median (IQR) number of people enrolled per household was 3 (2-4) ranging from 2 to 10. The median (IQR) age of subjects was 18 years (5-34) and 304 (93%) households included at least one child. Of 327 households, 176 (54%) had at least one household member colonized with ESCrE. Independent risk factors [adj OR (95%CI)] for household colonization were: (1) horse/donkey exposure [2.32 (1.05, 5.10)]; (2) yogurt consumption [1.73 (1.04, 2.88)]; (3) region [2.83 (1.48,5.43)]; and (4) enrollment during pre-COVID lockdown [2.90 (1.66, 5.05)].

conclusionsESCrE household colonization was common with evidence of geographic variability as well as a possible role of animal exposure. The role of yogurt exposure requires further study with consideration of source (commercial, homemade). Further prospective studies of household ESCrE colonization with longitudinal assessments of exposures are required to identify effective prevention strategies.

Indexed as

Cephalosporin ResistanceCephalosporinsEnterobacteriaceaeEnterobacteriaceae InfectionsAdolescentAdultAnti-Bacterial AgentsBotswanaChildChild, PreschoolFamily CharacteristicsFemaleHumansMaleMiddle AgedRisk FactorsAnti-Bacterial AgentsCephalosporinsAntibioticColonizationExtended- spectrum cephalosporinHouseholdLow and middle income countriesResistance

Identifiers

PMID40437512
PMCPMC12121026

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.