Evidence map›Paper›PMID 40437366›Full record

ArticleBMC genomic data2025

Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea).

Hayley Goss, Paige Miller, Susan F Zaleski, Robert J Miller, Donna M Schroeder, Henry M Page

Erratum issuedAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Hayley GossMarine Science Institute, University of California Santa Barbara, Santa Barbara, CA, 93106, USA. hgoss@ucsb.edu.
Paige MillerMarine Science Institute, University of California Santa Barbara, Santa Barbara, CA, 93106, USA.
Susan F ZaleskiBureau of Ocean Energy Management, 760 Paseo Camarillo, Suite 102, Camarillo, CA, 93010, USA.
Robert J MillerMarine Science Institute, University of California Santa Barbara, Santa Barbara, CA, 93106, USA.
Donna M SchroederBureau of Ocean Energy Management, 760 Paseo Camarillo, Suite 102, Camarillo, CA, 93010, USA.
Henry M PageMarine Science Institute, University of California Santa Barbara, Santa Barbara, CA, 93106, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThis genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation. DATA DESCRIPTION: The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.

Indexed as

GenomeGenomicsPectinidaeAnimalsMolecular Sequence AnnotationCrassadoma giganteanDraft genomeGenome assemblyPurple-hinged rock scallop

Identifiers

PMID40437366
PMCPMC12121003

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.