Evidence map›Paper›PMID 40436863›Full record

ArticleScientific data2025

Large Scale MRI Collection and Segmentation of Cirrhotic Liver.

Debesh Jha, Onkar Kishor Susladkar, Vandan Gorade, Elif Keles, Matthew Antalek, Deniz Seyithanoglu, Timurhan Cebeci, Halil Ertugrul Aktas, Gulbiz Dagoglu Kartal, Sabahattin Kaymakoglu and 7 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Debesh JhaMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.ORCID http://orcid.org/0000-0002-8078-6730
Onkar Kishor SusladkarMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Vandan GoradeMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Elif KelesMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Matthew AntalekMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Deniz SeyithanogluIstanbul University, School of Medicine (Capa), Istanbul, Turkey.
Timurhan CebeciIstanbul University, School of Medicine (Capa), Istanbul, Turkey.
Halil Ertugrul AktasMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Gulbiz Dagoglu KartalIstanbul University, School of Medicine (Capa), Istanbul, Turkey.
Sabahattin KaymakogluIstanbul University, School of Medicine (Capa), Istanbul, Turkey.
Sukru Mehmet ErturkIstanbul University, School of Medicine (Capa), Istanbul, Turkey.
Yuri VelichkoMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Daniela P LadnerMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Amir A BorhaniMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Alpay MedetalibeyogluIstanbul University, School of Medicine (Capa), Istanbul, Turkey.
Gorkem DurakMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA.
Ulas BagciMachine & Hybrid Intelligence Lab, Department of Radiology, Northwestern University, Chicago, IL, 60611, USA. ulas.bagci@northwestern.edu.ORCID http://orcid.org/0000-0001-7379-6829

Funding

Data Coordinating Center for the Type 1 Diabetes in Acute Pancreatitis ConsortiumU01DK127384 · NIDDK · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Vernon M Chinchilli, Temel Tirkes · 2020 to 2026
$21.3M
Cyst-X: Interpretable Deep Learning Based Risk Stratification of Pancreatic Cystic TumorsR01CA246704 · NCI · UNIVERSITY OF CENTRAL FLORIDA · PI BAGCI, ULAS · 2020 to 2024
$2.4M
Radiologist-Centered Artificial Intelligence (RCAI) for Lung Cancer Screening and DiagnosisR01CA240639 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BAGCI, ULAS · 2020 to 2024
$2.0M
Hybrid Intelligence for Trustable Diagnosis And Patient Management of Prostate Cancer (HIT-PIRADS)U01CA268808 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Ulas Bagci · 2023 to 2026
$1.5M
NCI NIH HHS R01 CA240639NCI NIH HHS R01 CA246704NCI NIH HHS U01 CA268808NIDDK NIH HHS U01 DK127384U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-CA240639U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-CA246704U.S. Department of Health & Human Services | National Institutes of Health (NIH) U01-CA268808
6 · The paper itself

Abstract

Liver cirrhosis represents the end stage of chronic liver disease, characterized by extensive fibrosis and nodular regeneration that significantly increases mortality risk. While magnetic resonance imaging (MRI) offers a non-invasive assessment, accurately segmenting cirrhotic livers presents substantial challenges due to morphological alterations and heterogeneous signal characteristics. Deep learning approaches show promise for automating these tasks, but progress has been limited by the absence of large-scale, annotated datasets. Here, we present CirrMRI600+, the first comprehensive dataset comprising 628 high-resolution abdominal MRI scans (310 T1-weighted and 318 T2-weighted sequences, totaling nearly 40,000 annotated slices) with expert-validated segmentation labels for cirrhotic livers. The dataset includes demographic information, clinical parameters, and histopathological validation where available. Additionally, we provide benchmark results from 11 state-of-the-art deep learning experiments to establish performance standards. CirrMRI600+ enables the development and validation of advanced computational methods for cirrhotic liver analysis, potentially accelerating progress toward automated Cirrhosis visual staging and personalized treatment planning.

Indexed as

LiverLiver CirrhosisMagnetic Resonance ImagingDeep LearningHumans

Identifiers

PMID40436863
PMCPMC12119857

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.