Evidence map›Paper›PMID 40434808›Full record

ArticleBlood cancer discovery2025

Impact of Genetic Ancestry on Genomics and Survival Outcomes in T-cell Acute Lymphoblastic Leukemia.

Haley Newman, Shawn H R Lee, Petri Pölönen, Rawan Shraim, Yimei Li, Hongyan Liu, Richard Aplenc, Shovik Bandyopadhyay, Changya Chen, Meenakshi Devidas and 32 more

Erratum issuedAbstract read
In one paragraph

Article in Blood cancer discovery, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors.

Haley NewmanChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0002-3022-8052
Shawn H R LeeNational University Hospital, Singapore.ORCID 0000-0002-7161-3782
Petri PölönenSt. Jude Children's Research Hospital, Memphis, TN, United States.ORCID 0000-0001-6128-9985
Rawan ShraimChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0009-0005-5350-3386
Yimei LiChildren's Hospital of Philadelphia, United States.ORCID 0000-0001-9067-6992
Hongyan LiuChildren's Hospital of Philadelphia, United States.ORCID 0000-0002-5308-4362
Richard AplencChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0001-7482-5644
Shovik BandyopadhyayUniversity of Pennsylvania, Philadelphia, PA, United States.ORCID 0000-0003-3919-3914
Changya ChenChildren's Hospital of Philadelphia, United States.ORCID 0000-0003-4421-2462
Meenakshi DevidasSt. Jude Children's Research Hospital, United States.ORCID 0000-0002-1099-3478
Caroline DiorioChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0002-8005-3836
Kimberly DunsmoreUniversity of Virginia Medical Center, Charlottesville, Virginia, United States.ORCID 0000-0002-6631-5174
Omar ElghawyUniversity of Pennsylvania, Philadelphia, PA, United States.ORCID 0000-0002-0786-8035
Amira ElhachimiChildren's Hospital of Philadelphia, United States.ORCID 0009-0008-7603-5142
Tori FullerChildren's Hospital of Philadelphia, United States.ORCID 0009-0005-1217-9436
Sumit GuptaHospital for Sick Children, Toronto, Ontario, Canada.ORCID 0000-0003-1334-3670
Junior HallChildren's Hospital of Philadelphia, United States.ORCID 0009-0004-5213-5553
Andrew D HughesChildren's Hospital of Philadelphia, United States.ORCID 0000-0002-1251-2404
Stephen P HungerChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0002-5492-3957
Mignon L LohSeattle Children's Hospital, Seattle, WA, United States.ORCID 0000-0003-4099-4700
Zachary MartinezChildren's Hospital of Philadelphia, United States.ORCID 0009-0008-3465-3233
Michael F McCoyChildren's Hospital of Philadelphia, Philadelphia, United States.ORCID 0000-0001-5215-2725
Cassidy G MullenChildren's Hospital of Philadelphia, United States.ORCID 0009-0008-5106-2160
Stanley B PoundsSt. Jude Children's Research Hospital, Memphis, United States.ORCID 0000-0002-9167-2114
Elizabeth RaetzNew York University Langone Medical Center, New York, New York, United States.ORCID 0000-0002-8547-1658
Anna Eames SeffernickSt. Jude Children's Research Hospital, United States.ORCID 0000-0003-0848-4604
Gongping ShiChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0001-8432-8553
Jonathan SussmanUniversity of Pennsylvania, Philadelphia, PA, United States.ORCID 0000-0002-3057-3550
Kai TanChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0002-9104-5567
Lahari UppuluriChildren's Hospital of Philadelphia, United States.ORCID 0000-0002-7217-892X
Tiffaney L VincentChildren's Hospital of Philadelphia, Philadelphia, United States.ORCID 0009-0004-6147-7088
Ruth Wang'onduSt. Jude Children's Research Hospital, United States.ORCID 0000-0002-4586-8933
Lena E WinestoneUCSF Benioff Children's Hospital, San Francisco, CA, United States.ORCID 0000-0001-9982-1594
Stuart S WinterChildren's Minnesota Research Institute and Cancer and Blood Disorders Program, Minneapolis, Minnesota, United States.ORCID 0000-0003-3583-7727
Brent L WoodChildren's Hospital of Los Angeles, Los Angeles, CA, United States.ORCID 0000-0001-7414-3969
Gang WuSt. Jude Children's Research Hospital, Memphis, TN, United States.ORCID 0000-0002-1678-5864
Jason XuUniversity of Pennsylvania, United States.ORCID 0000-0002-9061-3593
Wenjian YangSt. Jude Children's Research Hospital, Memphis, United States.ORCID 0000-0002-7305-5649
Charles G MullighanSt. Jude Children's Research Hospital, Memphis, TN, United States.ORCID 0000-0002-1871-1850
Jun J YangSt. Jude Children's Research Hospital, Memphis, TN, United States.ORCID 0000-0002-0770-9659
Kira BonaDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA, United States.ORCID 0000-0001-5602-7059
David T TeacheyChildren's Hospital of Philadelphia, Philadelphia, PA, United States.ORCID 0000-0001-7373-8987

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Shondra Michelle Miller · 1985 to 2026
$166.9M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
COG U24 Funding 2026-2027U24CA196173 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI Mignon Lee-Cheun Loh, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$62.5M
HEMATOLOGY CLINICAL RESEARCH TRAINING PROGRAMT32HL007439 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LAWRENCE F BRASS, PETER S KLEIN · 1985 to 2026
$17.1M
Physician Scientist Training in Clinical OncologyK12CA076931 · NCI · UNIVERSITY OF PENNSYLVANIA · PI STEPHEN Patrick HUNGER, LYNN M. SCHUCHTER · 1997 to 2026
$16.5M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
Translating genomic discoveries to improved outcomes for high risk acute leukemiaR35CA197695 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Charles G Mullighan · 2017 to 2026
$11.4M
Project 4U54CA243124 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MULLIGHAN, CHARLES G. · 2019 to 2023
$10.5M
LAMPSP01CA298963 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Jian Xu · 2025 to 2026
$9.1M
T32 Institutional Pediatric ResearchT32HD043021 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI Joseph W. St. Geme · 2002 to 2026
$6.4M
Improving risk allocation and developing novel therapies for children with T-ALL and T-LLR01CA193776 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI Terzah M Horton, ADAM B OLSHEN · 2015 to 2026
$6.2M
NCI NIH HHS K12 CA076931NCI NIH HHS P01 CA298963NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA193776NCI NIH HHS R01 CA264837NCI NIH HHS R03 CA256550NCI NIH HHS R35 CA197695NCI NIH HHS T32 CA236748NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766NCI NIH HHS U24 CA196173NCI NIH HHS U54 CA243124NCI NIH HHS UG1 CA233249NHLBI NIH HHS T32 HL007439NICHD NIH HHS T32 HD043021
6 · The paper itself

Abstract

The influence of genetic ancestry on genomics in T-cell Acute Lymphoblastic Leukemia (T-ALL) has not been fully explored. We examined the impact of genetic ancestry on multi-omic alterations, survival outcomes, and risk stratification. Among 1309 children and young adults with T-ALL treated on the Children's Oncology Group trial AALL0434, the prognostic value of five commonly altered T-ALL genes varied by ancestry-including NOTCH1, which was associated with superior overall survival for patients of European ancestry but non-prognostic among patients of African ancestry. Integrating genetic ancestry with published T-ALL risk classifiers, we identified that a X01 Penalized Cox Regression classifier stratified patients regardless of ancestry, whereas a European multi-gene classifier misclassified patients of certain ancestries. Overall, 80% of patients harbored a genomic alteration in at least one gene with differential prognostic impact in an ancestry-specific manner. These data demonstrate the importance of incorporating genetic ancestry into genomic risk classification.

Indexed as

GenomicsPrecursor T-Cell Lymphoblastic Leukemia-LymphomaAdolescentAdultChildChild, PreschoolFemaleHumansInfantMalePrognosisWhite PeopleYoung Adult

Identifiers

PMID40434808
PMCPMC12405861

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.