Evidence map›Paper›PMID 40434115›Full record

ArticlemBio2025

CRISPR/dCas-mediated counter-silencing: reprogramming dCas proteins into antagonists of xenogeneic silencers.

Johanna Wiechert, Biel Badia Roigé, Doris Dohmen-Olma, Hindra, Xiafei Zhang, Roberto G Stella, Marie A Elliot, Julia Frunzke

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. DNA-intercalating antiphage molecules trigger abortive infection through mutual destruction and synergize with bacterial immunity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Johanna WiechertInstitute of Bio- and Geoscience-IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, North Rhine-Westphalia, Germany.ORCID 0000-0001-9703-0991
Biel Badia RoigéInstitute of Bio- and Geoscience-IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, North Rhine-Westphalia, Germany.
Doris Dohmen-OlmaInstitute of Bio- and Geoscience-IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, North Rhine-Westphalia, Germany.
HindraDepartment of Biology, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0002-8411-8123
Xiafei ZhangDepartment of Biology, McMaster University, Hamilton, Ontario, Canada.
Roberto G StellaInstitute of Bio- and Geoscience-IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, North Rhine-Westphalia, Germany.
Marie A ElliotDepartment of Biology, McMaster University, Hamilton, Ontario, Canada.ORCID 0000-0001-6546-5835
Julia FrunzkeInstitute of Bio- and Geoscience-IBG-1: Biotechnology, Forschungszentrum Jülich, Jülich, North Rhine-Westphalia, Germany.ORCID 0000-0001-6209-7950

Funding

CIHR 162340Deutsche Forschungsgemeinschaft 458090666Jürgen Manchot Stiftung
6 · The paper itself

Abstract

Lsr2-like nucleoid-associated proteins function as xenogeneic silencers (XSs) inhibiting expression of horizontally acquired, adenine-thymine-rich DNA in actinobacteria. Interference by transcription factors can lead to counter-silencing of XS target promoters, but relief of this repression typically requires promoter engineering. In this study, we developed a novel clustered regularly interspaced short palindromic repeats (CRISPR)/dCas-mediated counter-silencing (CRISPRcosi) approach by using nuclease-deficient dCas enzymes to counteract the Lsr2-like XS protein CgpS in IMPORTANCE: Lsr2-like nucleoid-associated proteins act as xenogeneic silencers (XSs), repressing the expression of horizontally acquired, adenine-thymine-rich DNA in actinobacteria. The targets of Lsr2-like proteins are very diverse, including prophage elements, virulence gene clusters, and biosynthetic gene clusters. Consequently, the targeted activation of XS target genes is of interest for fundamental research and biotechnological applications. Traditional methods for counter-silencing typically require promoter modifications. In this study, we developed a novel clustered regularly interspaced short palindromic repeats (CRISPR)/dCas-mediated counter-silencing (CRISPRcosi) approach, utilizing nuclease-deficient dCas enzymes to counteract repression by Lsr2-like proteins in

Indexed as

Bacterial ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCorynebacterium glutamicumCRISPR-Cas SystemsGene Expression Regulation, BacterialGene SilencingStreptomycesPromoter Regions, GeneticBacterial ProteinsActinobacteriaCorynebacteriumCRISPRLsr2phage-host interactionxenogeneic silencing

Identifiers

PMID40434115
PMCPMC12239563

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.