Evidence map›Paper›PMID 40433855›Full record

ArticleThe ISME journal2025

Chemotaxis, growth, and inter-species interactions shape early bacterial community assembly.

Estelle E Clerc, Jeremy E Schreier, Jonasz Słomka, Christa B Smith, He Fu, Justin R Seymour, Jean-Baptiste Raina, Mary Ann Moran, Roman Stocker

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Estelle E ClercDepartment of Civil, Environmental, and Geomatic Engineering, Institute for Environmental Engineering, ETH Zurich, 8093 Zurich, Switzerland.
Jeremy E SchreierDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, United States.
Jonasz SłomkaDepartment of Civil, Environmental, and Geomatic Engineering, Institute for Environmental Engineering, ETH Zurich, 8093 Zurich, Switzerland.
Christa B SmithDepartment of Marine Sciences, University of Georgia, Athens, GA 30602, United States.
He FuDepartment of Biology, North Carolina Agricultural and Technical State University, Greensboro, NC 27411, United States.
Justin R SeymourClimate Change Cluster, University of Technology Sydney, 15 Broadway, Ultimo NSW 2007, Australia.
Jean-Baptiste RainaClimate Change Cluster, University of Technology Sydney, 15 Broadway, Ultimo NSW 2007, Australia.
Mary Ann MoranDepartment of Marine Sciences, University of Georgia, Athens, GA 30602, United States.
Roman StockerDepartment of Civil, Environmental, and Geomatic Engineering, Institute for Environmental Engineering, ETH Zurich, 8093 Zurich, Switzerland.

Funding

Australian Research DP200100919 to J-B.R.Australian Research Council Future Fellowship FT210100100Gordon and Betty Moore Foundation Symbiosis in Aquatic Systems Initiative Investigator Award GBMF9197J.E.S. GRFP-1445117J.S. acknowledges funding from Swiss National Science Foundation Ambizione PZ00P2_202188M.A.M. 542391M.A.M. OCE-2019589Simons Foundation through the Principles of Microbial Ecosystems (PriME) collaboration to R.S 542395Swiss National Science Foundation 205321_207488
6 · The paper itself

Abstract

From the perspective of a marine copiotrophic bacterium, the surface ocean is a mosaic of exploitable hotspots of organic matter released from living and senescing phytoplankton. Bacterial success in exploiting this patchy microscale environment relies on sensing and swimming towards the hotspots, and upon arrival, growing on available substrates. However, the combined effect of chemotaxis and growth rate on bacterial community assembly has never been quantified. Here, we characterized chemotaxis and growth rate responses of seven representative copiotrophic marine bacteria to phytoplankton exometabolites, both for single species and for pairs of species. We compared these results to prediction of a mathematical null model of hotspot community assembly. Our results revealed that the bacterial strains exhibit diverse responses to phytoplankton metabolites, which can act as either signals, substrates, or both. Interactions between bacterial pairs resulted in chemotactic responses or growth rates different from model predictions in all of the 12 pairs tested (83% differed in chemotaxis, 33% in growth). These community dynamics indicate that inter-species interaction is another factor shaping early colonization of metabolite hotspots, with beneficial, detrimental, and neutral associations observed between bacterial species. Such complex ecological interactions impact chemotactic behaviors and growth rates of marine bacteria on resource hotspots, affecting their community compositions and associated functions relevant to the cycling of key elements including carbon.

Indexed as

BacteriaBacterial Physiological PhenomenaChemotaxisMicrobial InteractionsMicrobiotaSeawaterPhytoplanktonchemotaxiscommunity assemblygrowthmicrobial communitiesmicrofluidics

Identifiers

PMID40433855
PMCPMC12202767

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.