Evidence map›Paper›PMID 40431682›Full record

ArticleViruses2025

Optimization and Validation of Universal Real-Time RT-PCR Assay to Detect Virulent Newcastle Disease Viruses.

Ellen Ruth Alexander Morris, Megan E Schroeder, Phelue N Anderson, Lisa J Schroeder, Nicholas Monday, Gabriel Senties-Cue, Martin Ficken, Pamela J Ferro, David L Suarez, Kiril M Dimitrov

Abstract readValidation Study
In one paragraph

Article in Viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ellen Ruth Alexander MorrisTexas A&M Veterinary Medical Diagnostic Laboratory, College Station, TX 77843, USA.ORCID 0000-0002-7957-4642
Megan E SchroederTexas A&M Veterinary Medical Diagnostic Laboratory, College Station, TX 77843, USA.
Phelue N AndersonTexas A&M Veterinary Medical Diagnostic Laboratory, Center, TX 75935, USA.
Lisa J SchroederTexas A&M Veterinary Medical Diagnostic Laboratory, Gonzales, TX 78629, USA.
Nicholas MondayTexas A&M Veterinary Medical Diagnostic Laboratory, Canyon, TX 79016, USA.
Gabriel Senties-CueTexas A&M Veterinary Medical Diagnostic Laboratory, Center, TX 75935, USA.
Martin FickenTexas A&M Veterinary Medical Diagnostic Laboratory, Gonzales, TX 78629, USA.
Pamela J FerroTexas A&M Veterinary Medical Diagnostic Laboratory, College Station, TX 77843, USA.
David L SuarezExotic and Emerging Avian Viral Disease Research Unit, Southeast Poultry Research Laboratory, U.S. National Poultry Research Center, U.S. Department of Agriculture, Athens, GA 30605, USA.ORCID 0000-0003-4582-6116
Kiril M DimitrovTexas A&M Veterinary Medical Diagnostic Laboratory, College Station, TX 77843, USA.ORCID 0000-0002-5525-4492

Funding

APHIS National Animal Health Laboratory Network Enhancement Project AP20VSD&B000C021
6 · The paper itself

Abstract

Newcastle disease, caused by virulent strains of avian paramyxovirus 1 (APMV-1), occurs globally and has significant social and economic impact. APMV-1 is a rapidly evolving RNA virus and is genetically divided into class I and class II with almost all virulent viruses being of class II. The considerable genetic diversity of the virus adds complexity to maintaining the high sensitivity and specificity of molecular detection assays. The current USDA's fusion gene rRT-PCR assay was designed for class II APMV-1 isolates with an emphasis on early-2000s US strains. Assessment with globally circulating genotypes confirmed previously described lower sensitivity (sub-genotypes VII.1.1, VII.2) and identified absence of detection (genotype XIV). An additional forward primer and two probes were designed using a comprehensive complete fusion gene sequence database. The optimized multiplex assay detected genotype XIV and improved sensitivity for sub-genotypes VII.1.1 and VII.2, with maintained sensitivity for the remaining genotypes. No near-neighbors or APMV-1 of low virulence were detected. Using field and experimental clinical samples, both the specificity and sensitivity were determined to be 100%, compared to the current assay with 100% and 93%, respectively. The new assay identifies all known chicken virulent APMV-1 genotypes with the benefit of using an exogenous internal positive control, which monitors extraction efficiency and inhibitors.

Indexed as

Newcastle DiseaseNewcastle disease virusPoultry DiseasesReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionAnimalsChickensGenotypeRNA, ViralSensitivity and SpecificityVirulenceRNA, ViralAPMV-1avian paramyxovirus 1exogenous internal positive controlgenotypeNDVNewcastle diseaseqPCRrRT-PCR

Identifiers

PMID40431682
PMCPMC12115569

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.