Evidence map›Paper›PMID 40429818›Full record

ArticleInternational journal of molecular sciences2025

Germline Sequencing of Familial and Sporadic Early-Onset Colorectal Cancer: A Novel Pattern of Genes.

Pierre Vande Perre, Ayman Al Saati, Bastien Cabarrou, Julien Plenecassagnes, Julia Gilhodes, Nils Monselet, Norbert Lignon, Thomas Filleron, Carine Villarzel, Laure Gourdain and 8 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Pierre Vande PerreOncogenetics Laboratory, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.ORCID 0000-0001-7595-7243
Ayman Al SaatiOncogenetics Laboratory, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.ORCID 0000-0002-1517-4156
Bastien CabarrouBiostatistics & Health Data Science Unit, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Julien PlenecassagnesBioinformatic Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Julia GilhodesBiostatistics & Health Data Science Unit, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Nils MonseletBiostatistics & Health Data Science Unit, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Norbert LignonOncogenetics Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Thomas FilleronBiostatistics & Health Data Science Unit, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Carine VillarzelOncogenetics Laboratory, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Laure GourdainOncogenetics Laboratory, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Janick SelvesPathology Laboratory, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Mathilde MartinezOncology Department, Clinique Pasteur, 31076 Toulouse, France.
Edith ChipouletOncogenetics Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Gaëlle ColletOncogenetics Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Ludovic MalletBioinformatic Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.ORCID 0000-0002-3246-389X
Delphine BonnetOncogenetics Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Rosine GuimbaudOncogenetics Department, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.
Christine ToulasOncogenetics Laboratory, Oncopole Claudius Regaud, IUCT-Oncopole, 31059 Toulouse, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of early-onset colorectal cancers (EOCRCs) are not substantiated by germline variants in the main CRC predisposition genes (the "DIGE" panel). To identify potentially novel EOCRC-specific predisposition genes, we analyzed 585 cancer pathway genes in an EOCRC patient cohort (n = 87, diagnosis ≤ 40 years, DIGE-), and compared their variant spectrum to the GnomAD cancer-free database. We identified high-impact variants (HVs) in 15 genes significantly over-represented in EOCRC. Among the 32 unrelated patients with a CRC family history (i.e., with a potentially dominant transmission pattern), 9 presented HVs in ten genes, four of which had a DNA repair function. We subsequently sequenced these 15 genes in a cohort of 82 late-onset CRCs (diagnosis ≥ 50 years, DIGE-) and found variants in 11 of these genes to be specific to EOCRC. We then screened these 11 genes in our patient database (n = 6482), which only contained 2% of EOCRCs (DIGE-), and identified two other EOCRC cases diagnosed after our cohort constitution, with HVs in

Indexed as

Colorectal NeoplasmsGenetic Predisposition to DiseaseGerm-Line MutationAdultAgedAge of OnsetFemaleHumansMaleMiddle Agedearly-onset colorectal cancergermline variantsmolecular genetics of EOCRCNGS panel

Identifiers

PMID40429818
PMCPMC12111735

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.