Evidence map›Paper›PMID 40428334›Full record

ArticleGenes2025

Integrated Genomic and Transcriptomic Analysis Reveals a Transcription Factor Gene Set Facilitating Gonadal Differentiation in the Pacific Oyster

Yunwang Shen, Ziyi Wang, Yanglei Jia, Xiao Liu

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yunwang ShenNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
Ziyi WangNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
Yanglei JiaNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.
Xiao LiuNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan 316022, China.

Funding

National Natural Science Foundation of China 32301408National Natural Science Foundation of China 41676152Special Grant of Zhoushan for Breeding Aquatic Animals 2024Y001-2
6 · The paper itself

Abstract

BACKGROUND/

objectivesThe Pacific oyster

methodsIn this study, a systematic identification of TFs revealed 1167 TF genes in the

resultsThe majority of these sex-related TF genes were up-regulated in female or male gonads from the inactive stage to the mature stage. Moreover, this TF gene set was deeply conserved and showed similar regulation in the Kumamoto oyster

conclusionsTo the best of our knowledge, this study provides the first report of the whole TF family in

Indexed as

CrassostreaGonadsSex DifferentiationTranscription FactorsTranscriptomeAnimalsFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGenomeGenomicsMaleSex Determination ProcessesTranscription FactorsCrassostrea gigasgonadal differentiationPacific oystersex determinationtranscription factor

Identifiers

PMID40428334
PMCPMC12111275

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.